Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05360 ATGGGTACTTCCATTCCTTGCGTTCAGAGGATTTCAAAGTCCCCTTCACCGTCACCCTGGAAGGCTCAATCAAGATCACGATCGAGATCAAGGTCGAGGTCTGTGCCTAGACAAAGACCAAGATCTGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGGAGCCCGGAAAGGGCGGCCAATCCTATAAATCCTGGTAATACACTTTATGTTACTGGTCTATCTTCAAGGGTCACTGAGAGGGACCTAGAGGACCATTTTTCCAAGGAGGGAAAAGTTGCTTCATGCTTTCTTGTAGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACTATGGATTCCCACGAGGATGCTGAGCGGTGTATCAAGCATCTCAACCAATCAGTTTTAGAGGGCCGCTATGTCACCGTAGAATGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAGAATACTAGAGACTATGGCTCTCGTGGTGACAATCGTGATGACTATCGTGGCGGAAATCGTGGTGACTATCATGGTGACTATCGTGGCGACAGTCGTGGTGACTATCGTGGCGACAGTCGAGGTGAGTTTTGTGGCAGCAGTCGTGGTGACTTTCGTGGCGATGGTTGTGGTGACTTTCATGGCGACAATCGTGGTGACCGAGGAAGGAATTACAGTGGTTCTGATCGTGGTGATTATCCACATTGTAGATCTCCAAGGTGTTCCCCATACCACGGAGGCCCAGATCATTCACCATAG 774 0.4974 MGTSIPCVQRISKSPSPSPWKAQSRSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERAANPINPGNTLYVTGLSSRVTERDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYVTVEWSRRKRARTPTPGHYLGLKNTRDYGSRGDNRDDYRGGNRGDYHGDYRGDSRGDYRGDSRGEFCGSSRGDFRGDGCGDFHGDNRGDRGRNYSGSDRGDYPHCRSPRCSPYHGGPDHSP 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05360 257 MobiDBLite consensus disorder prediction 1 69 - -
Vifa2g05360 257 MobiDBLite consensus disorder prediction 36 54 - -
Vifa2g05360 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 137 IPR000504 GO:0003723
Vifa2g05360 257 SMART rrm1_1 67 140 IPR000504 GO:0003723
Vifa2g05360 257 MobiDBLite consensus disorder prediction 213 241 - -
Vifa2g05360 257 MobiDBLite consensus disorder prediction 148 198 - -
Vifa2g05360 257 SUPERFAMILY RNA-binding domain, RBD 59 174 IPR035979 GO:0003676
Vifa2g05360 257 Gene3D - 11 150 IPR012677 -
Vifa2g05360 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 144 IPR000504 GO:0003723
Vifa2g05360 257 MobiDBLite consensus disorder prediction 213 257 - -
Vifa2g05360 257 CDD RRM_SF 68 140 - -
Vifa2g05360 257 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g05360 257 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 5 150 - -
Vifa2g05360 257 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 51 234 - -
Vifa2g05360 257 MobiDBLite consensus disorder prediction 164 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05360 Vifa-Chr2 1595411542 1595413611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05360 63 142 Eukaryotic Initiation Factors Gene Family AT3G11400 37.500 1.01e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05360 K12897 - egr:104422807 232.646