Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05344 ATGGAAGGACATCAATTCCATCACAAAAACCAAAGACAACAACAACAACATCAACAAAATCTTCATCTTCTTCATCAGAATATCAATAACACTGTTAACGTTTTTGATGTTTCTGATAGATTTCCTCAATGGAGCATCCAAGAAACCAAAGAGTTTCTTATCATAAGAGCGGAGCTAGATCAAACTTTCATGGAGACTAAAAGGAACAAACAGTTGTGGGAAGTTATTTCTAACCATATGAAGGAAAAAGGTTACCATAGAAGTGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTAGTTACTCGCTACAAGGGATGCGAGACAATGGAGACAGAAATGCTGAAACATCAATTTCCATTTTACAATGAACTTCAAGCAATTTTCACAGCAAGAATGCAGAGAATGCTATGGGCTGAAGCCGAAGACGGATCAAAGAAAAACAAGGCAACGAATCTTTCAACCGACGACGAGGAAGACGATGGTAAAGAAGAAAGTGAAGAAATATCTCAAAAGGGTAGAACTAGAAGCAAAAAGAAGAAAAAAGCTAAGATAGTTAGCGAAAGCGGTAACGGCAGCAACAGCGGTTTCCACCAGAATTTGAAGGAGATTTTGGATGAGTTCATGAGGCAACAACTTCAAGTTGAAGCACAATGGATGGAAGCATTTGAAGCAAGAGAGAATGAAAGGAGGTTGAGGGAGATGGAATGGAGACAACAAATGGAAATGTTGGAGAATGAGAGATTGTTGATGGAACAAAGATGGAGAGAAAGGGATGAACAAAGGAGGATTAGAGAAGAAGCTAGGGCTGAGAAGAGGGATGCATTAATCATAGCTTTGTTAAATAAGTTAGAAAGAGAATAG 861 0.3879 MEGHQFHHKNQRQQQQHQQNLHLLHQNINNTVNVFDVSDRFPQWSIQETKEFLIIRAELDQTFMETKRNKQLWEVISNHMKEKGYHRSAEQCKCKWKNLVTRYKGCETMETEMLKHQFPFYNELQAIFTARMQRMLWAEAEDGSKKNKATNLSTDDEEDDGKEESEEISQKGRTRSKKKKKAKIVSESGNGSNSGFHQNLKEILDEFMRQQLQVEAQWMEAFEARENERRLREMEWRQQMEMLENERLLMEQRWRERDEQRRIREEARAEKRDALIIALLNKLERE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05344 286 Pfam Myb/SANT-like DNA-binding domain 43 127 IPR044822 -
Vifa2g05344 286 CDD GT1 42 107 - -
Vifa2g05344 286 ProSiteProfiles Myb-like domain profile. 44 100 IPR001005 -
Vifa2g05344 286 MobiDBLite consensus disorder prediction 140 197 - -
Vifa2g05344 286 MobiDBLite consensus disorder prediction 140 155 - -
Vifa2g05344 286 PANTHER FI21293P1 13 284 - -
Vifa2g05344 286 Gene3D - 44 105 - -
Vifa2g05344 286 Coils Coil 233 253 - -
Vifa2g05344 286 FunFam Zinc finger and SCAN domain-containing 20 44 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05344 Vifa-Chr2 1590765588 1590766583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05344 20 286 Trihelix Transcription Factor Family AT2G38250 54.579 3.83e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa2g05344 Myb_DNA-bind_4 2.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05344 - - gmx:100818384 343.969