Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05342 ATGGAAATGGCGTCAAGTCCTCGCTCCGTTGAAGAGATCTTCAAAGATTTCAGTGCTCGTCGAGACGGAATCGTTCGCGCTTTAACTCAAGATGTCGATGAATTCTACACTCTCTGTGATCCAGATAAGGATAACTTGTGCCTGTATGGACATTCGAATGAATCATGGGAAGTGACTCTTCCAGCAGAGGAGGTTCCACCTGAGCTTCCGGAACCAGCTCTTGGAATCAATTTTGCCAGGGATGGCATGAACCGTAGGGATTGGCTATCTCTTGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCTTTTTATCTCGGAGCTCGTCTTAATCGCAATGAAAGGAAACGTTTATTTAGCTTGATCAATGAGCTTCCAACTGTGTTTGAAGTTGTAACTGACAGGAAGCCAGTAAAGGACAACAAGCCCACTGTTGACAGTGGAAGCAAATCTCGGGGCAGCACCAAGAGATCAAGTGACGGGCAAGTCAAAAGCATCCCAAAGTTGGCAGATGATCAAGGTTATGAGGAGGAAGAAGATGAGCACAGTGAAACCCTTTGCGGGAGCTGCGGTGGAAACTACAACGCGGATGAATTTTGGATTGGCTGTGATATATGCGAGAGGTGGTACCATGGGAAGTGCGTGAAGATTACTCCTGCAAAAGCTGAGAGCATAAAGCAATACAAATGTCCATCATGCAGCATGAAGAGAGGCAGGCCCTAA 726 0.4669 MEMASSPRSVEEIFKDFSARRDGIVRALTQDVDEFYTLCDPDKDNLCLYGHSNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEVVTDRKPVKDNKPTVDSGSKSRGSTKRSSDGQVKSIPKLADDQGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKRGRP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05342 241 CDD PHD_AL_plant 187 237 IPR044104 -
Vifa2g05342 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 235 IPR013083 -
Vifa2g05342 241 PANTHER CPG BINDING PROTEIN 6 240 IPR045104 GO:0006355|GO:0042393
Vifa2g05342 241 MobiDBLite consensus disorder prediction 148 163 - -
Vifa2g05342 241 MobiDBLite consensus disorder prediction 139 178 - -
Vifa2g05342 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Vifa2g05342 241 FunFam PHD finger alfin-like protein 180 236 - -
Vifa2g05342 241 Pfam PHD-finger 188 236 IPR019787 -
Vifa2g05342 241 SMART PHD_3 187 235 IPR001965 -
Vifa2g05342 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Vifa2g05342 241 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Vifa2g05342 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05342 Vifa-Chr2 1590613280 1590615893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05342 4 240 Alfin-like Transcription Factor Family AT5G05610 76.793 7.71e-122 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vifa2g05342 Alfin 1.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05342 K26274 - zju:107405427 444.506