Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05341 ATGGGTGTTGATTACTATAAAGTCCTTCAGGTAGATCGTAATGCCAAAGAGGATGATCTCAAGAAAGCTTATCGCAAACTTGCTATGAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGATGCTGAGGCCAAATTCAAGCAAATCTCAGAAGCTTATGATGTTTTGAGTGATCCACAAAAGAGAGCTGTGTATGATCAGTATGGTGAGGAGGGATTGAAGGGGCAGATGCCTCCTCCTGGTGCAGGTGGATTTTCAGAAGCCAGTGATGGTGGGCCGACGACGTTCCGGTTCAATCCGAGAAGTCCTGATGACATATTTTCAGAGTTTTTCGGGTTTGCAAAACCGTTTGGTGGAATGGGTGATATGGGTGGTATGGGTGGTCATCCTGGTACTTCCGGCTTTCCGAGGGGGATGTTTAGGGATGACATTTTCTCTTCTTTAAGGAATGCAACAACTGGTGAAGGATCTGGCAATGTGCCGAGAAAAAGTGCACCAATAGAGAGAACACTGCCTTGCGGTTTGGAGGATTTGTATAAAGGGACCACCAAGAAAATGAAGATTTCTAGGGATGTTTCTGATTCTAGTGGGAGGCCTACTACAGTAGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACATTTCCCGAAAAGGGAAATGAACAAAAAGGACTTATTCCCGCAGACCTTGTTTTTATCATCGACGAGAAGCCTCATGGCGTCTTCAAGAGGGACGGCAACGATCTTGTTGTGACTCAGAAGATCTCTCTTGTAGAAGCTCTGACAGGTTACACAGCGCAAATAACAACCCTTGACGGAAGGAATCTTACGGTCCCCGTCAACACGATTATCAGTCCATCGTACGAAGAAGTTATCAAAGGAGAGGGTATGCCAATTCCTAAAGAACCTTCCAAAAAGGGAAACTTGAGAATCAAGTTCAACGTAAAGTTTCCGTCTAGACTTACATCTGAACAGAAGACCGGCATCAAGCGATTATTGACATAA 1029 0.4393 MGVDYYKVLQVDRNAKEDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPGAGGFSEASDGGPTTFRFNPRSPDDIFSEFFGFAKPFGGMGDMGGMGGHPGTSGFPRGMFRDDIFSSLRNATTGEGSGNVPRKSAPIERTLPCGLEDLYKGTTKKMKISRDVSDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQKGLIPADLVFIIDEKPHGVFKRDGNDLVVTQKISLVEALTGYTAQITTLDGRNLTVPVNTIISPSYEEVIKGEGMPIPKEPSKKGNLRIKFNVKFPSRLTSEQKTGIKRLLT 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05341 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 341 - -
Vifa2g05341 342 Pfam DnaJ domain 4 67 IPR001623 -
Vifa2g05341 342 MobiDBLite consensus disorder prediction 72 100 - -
Vifa2g05341 342 CDD DnaJ 4 59 IPR001623 -
Vifa2g05341 342 Gene3D - 167 245 - -
Vifa2g05341 342 SMART dnaj_3 3 62 IPR001623 -
Vifa2g05341 342 FunFam DnaJ subfamily B member 13 3 122 - -
Vifa2g05341 342 Gene3D DnaJ domain 3 122 IPR036869 -
Vifa2g05341 342 Pfam DnaJ C terminal domain 168 326 IPR002939 -
Vifa2g05341 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vifa2g05341 342 FunFam Dnaj homolog subfamily b member 164 245 - -
Vifa2g05341 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 249 335 IPR008971 GO:0006457|GO:0051082
Vifa2g05341 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vifa2g05341 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vifa2g05341 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vifa2g05341 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vifa2g05341 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vifa2g05341 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 168 247 IPR008971 GO:0006457|GO:0051082
Vifa2g05341 342 FunFam DnaJ subfamily B member 13 247 327 - -
Vifa2g05341 342 CDD DnaJ_C 166 329 - -
Vifa2g05341 342 Gene3D - 247 327 - -
Vifa2g05341 342 SUPERFAMILY Chaperone J-domain 3 95 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05341 Vifa-Chr2 1590115790 1590118902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05341 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 2.06e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05341 K09510 - gmx:100777607 590.497