Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05322 ATGCTTGGAGACAAGCTATCGATTGAAAAAGGGCAGCTTTGGACAACACCAAGTGCTGATATTGTGGTGGCACAAGATGGGAGTGGAAACTATAAAACAATCTCAGAGGGTGTAGCCGCTGTTAAGGGAAGTGGAAAAGGAAGAGTTGTTATTTATGTGAAAGCAGGAGTATACAAAGAGAACATTCATATAAAAAACATAGTTAAGAACATAATCATATTTGGAGATGGAATGGATTCAACCATTGTTACCGATAATCATAACGCTCAAAATGGTTCCACCACTTTTCGCTCAACTACTTTTGCTTGGTTCATGGTAACCTCAACTGAAATATCATGGAATGAAGAAGAATCAATGGTTGACAGTGTATTAGTGGTTCCAATGTAA 387 0.3798 MLGDKLSIEKGQLWTTPSADIVVAQDGSGNYKTISEGVAAVKGSGKGRVVIYVKAGVYKENIHIKNIVKNIIIFGDGMDSTIVTDNHNAQNGSTTFRSTTFAWFMVTSTEISWNEEESMVDSVLVVPM 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05322 128 SUPERFAMILY Pectin lyase-like 14 103 IPR011050 -
Vifa2g05322 128 Gene3D - 14 114 IPR012334 -
Vifa2g05322 128 PANTHER PECTINESTERASE 19 103 - -
Vifa2g05322 128 Pfam Pectinesterase 20 103 IPR000070 GO:0030599|GO:0042545
Vifa2g05322 128 ProSitePatterns Pectinesterase signature 1. 45 64 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05322 Vifa-Chr2 1583261739 1583264727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05322 2 102 Carbohydrate Esterase AT1G23200 55.340 4.88e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05322 - - gmx:100816802 128.257