Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05293 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACATTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTACTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCGCATTGTTGCCATCATTTCAGGAAACAACATTAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGAGAGTAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCAATCCCGAGACGTGGCATTGGCAACAGCAGCAAAATTTATAATGCTGAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCATGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1230 0.387 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPTNHEFLDFNFEYSAPSTRSRVFIRIVAIISGNNISEKAYEDGRTMVESKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKQSRDVALATAAKFIMLNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFHVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05293 409 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa2g05293 409 MobiDBLite consensus disorder prediction 149 189 - -
Vifa2g05293 409 SUPERFAMILY Cytochrome P450 200 402 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vifa2g05293 409 MobiDBLite consensus disorder prediction 159 189 - -
Vifa2g05293 409 PRINTS E-class P450 group I signature 199 216 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PRINTS E-class P450 group I signature 303 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PRINTS E-class P450 group I signature 219 245 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PRINTS E-class P450 group I signature 262 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PRINTS E-class P450 group I signature 339 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PRINTS E-class P450 group I signature 349 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 Gene3D Cytochrome P450 99 408 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 197 405 - -
Vifa2g05293 409 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa2g05293 409 SUPERFAMILY RING/U-box 13 66 - -
Vifa2g05293 409 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa2g05293 409 PRINTS P450 superfamily signature 340 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PRINTS P450 superfamily signature 263 274 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 PRINTS P450 superfamily signature 210 227 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa2g05293 409 FunFam Geraniol 8-hydroxylase 153 402 - -
Vifa2g05293 409 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa2g05293 409 Pfam Protein of unknown function (DUF3675) 67 128 IPR022143 -
Vifa2g05293 409 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 342 351 IPR017972 GO:0005506|GO:0016705
Vifa2g05293 409 Pfam Cytochrome P450 203 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05293 Vifa-Chr2 1573847936 1573849919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05293 203 405 Cytochrome P450 AT2G45550 56.158 1.75e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05293 - - cave:132173603 298.901