Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05285 ATGGGGTGTTTTCCTATATTGAAGAGAAAGAAGAAAAAGTCTGATCAGATTGTGTATGTAAAACGCGTAAGCCCTGGCGAGGATTCGCCTACAGTACTGCCTGAGCCTCAAACTCATACTCGCACACTCCAGTCAGCACCACCTAGTTTTAAGATCAGAGTGAAACCCATTCAATCCAGTGTTAAAGTCAGTAACAATAGAGTACGAGCATTGTCTGCTCCATCGTCTCTCGATGAAGCAGACCAAGATGCTTTGGCCTCAATTGAGTATGAGGAAGAAGAGCCAAAATATCGAGCTGCATCAGTGAAGGAACAGCGTTCGCCTAGTCCCCAACCTTTACCGCTTCCATCTCCTAAGGGTGGTGGTACGCTGAAGACTATTGGAAGCTTTAAGTTGGGGACAGCTAGTGGTCCCTTATATGCTTCTGGACCTCTGCCGCTTCCACCAACTGGGTCACTTAGAATTTTTTCTTACGACGAGCTTGCTGCTGCTTGCCACAATTTCTCTTCAGATCGATACATGTCAGAATCTCTTTCATCCACCATCTATAAAGCTTCCTTTGGTGATGATGCTTCAAGTTCGAAAAAGTTTGAAGCCACGGTCACACGCCTTCGCCCATCAAATCAGGGCTTGAAGGAATTCATAAATGAGGTTAATACTCTTGCATCTTTGCGGCATCCAAACCTCTGTAGAGTGCTTGGATTTCACGCCCGTGATGGTTCGGAACATAGAATGTTGGTTTATGAGAAGCTACACCATGGAAGCTTGGACCGCCTATTGTATGGGAGATCTGATGGACCATCAATTGATTGGAATACAAGAATGAAAATTGCAATATGTGCTGCACTTGGTCTTTCTTTCTTGCATGAAGAAGGGCCTTTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATACAGATTGACAAAGATTTTAGTGCAAAGCTTTCAGGGTATGGCTGTGTTGGACATGTTCCCAAGGAAGAAATTTCAAGCAGTTCATCTGCCGTTGGAAACCTATCCTTGGAAACACTGGAGAAAGGATTGCTCACTCCAAAGAGCAATGTATGGAGTTTTGGAATTTTTCTTCTAGAGCTACTTACGGGAAGAAAGAATCTCGATAGCCGTCACCCCAAGGAAGAGAGGAATTTGGTGAAGTGGAGCAGGCCTTTCCTATCAGATAATCATCGTTTGTCAATGATCATGGATCCTCAACTCAAAGGTCGCTTCCCTTCTAAAGCGGCAAGAACAATAGCTAACATTGCACAAAGATGCCTTCAAATGGAGCCATCAGAAAGACCAACTATGGGAACCGTTGTGGAAAATCTAAAAAAGATACAAGATTTGAAGCATTCTTCTAAATTCCCATTGCAAGAACCAGCACAAACCTCTACAAAACAAATGTCAAGATCACCAAGTCTCGACGCTATCATCCACCCTGCATCAAGGTCGAGTTTCTCTCCTTCACCATCAGCCAGAGCACTGGTATCTGTTTCGCCTCCAAGATGGTCGGGAGTGCCAATTCAACTTCCGCATCACGCTTTTTCTTCTACCCTATATTTGGAGGAGCTTGATAGGCAAGAAAGCCGCAAGTCATTAACCTCAGCCTCTAGGAAGGCTAGTGTTGAAGGATTTTGA 1638 0.442 MGCFPILKRKKKKSDQIVYVKRVSPGEDSPTVLPEPQTHTRTLQSAPPSFKIRVKPIQSSVKVSNNRVRALSAPSSLDEADQDALASIEYEEEEPKYRAASVKEQRSPSPQPLPLPSPKGGGTLKTIGSFKLGTASGPLYASGPLPLPPTGSLRIFSYDELAAACHNFSSDRYMSESLSSTIYKASFGDDASSSKKFEATVTRLRPSNQGLKEFINEVNTLASLRHPNLCRVLGFHARDGSEHRMLVYEKLHHGSLDRLLYGRSDGPSIDWNTRMKIAICAALGLSFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHVPKEEISSSSSAVGNLSLETLEKGLLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLSDNHRLSMIMDPQLKGRFPSKAARTIANIAQRCLQMEPSERPTMGTVVENLKKIQDLKHSSKFPLQEPAQTSTKQMSRSPSLDAIIHPASRSSFSPSPSARALVSVSPPRWSGVPIQLPHHAFSSTLYLEELDRQESRKSLTSASRKASVEGF 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05285 545 Pfam Protein tyrosine and serine/threonine kinase 182 443 IPR001245 GO:0004672|GO:0006468
Vifa2g05285 545 MobiDBLite consensus disorder prediction 18 47 - -
Vifa2g05285 545 PANTHER OS01G0588500 PROTEIN-RELATED 104 447 - -
Vifa2g05285 545 MobiDBLite consensus disorder prediction 456 472 - -
Vifa2g05285 545 SUPERFAMILY Protein kinase-like (PK-like) 146 451 IPR011009 -
Vifa2g05285 545 Gene3D Transferase(Phosphotransferase) domain 1 251 470 - -
Vifa2g05285 545 MobiDBLite consensus disorder prediction 526 545 - -
Vifa2g05285 545 MobiDBLite consensus disorder prediction 31 47 - -
Vifa2g05285 545 Gene3D Phosphorylase Kinase; domain 1 149 249 - -
Vifa2g05285 545 ProSiteProfiles Protein kinase domain profile. 168 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05285 545 MobiDBLite consensus disorder prediction 452 472 - -
Vifa2g05285 545 MobiDBLite consensus disorder prediction 95 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05285 Vifa-Chr2 1572092475 1572095661 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05285 147 447 Receptor kinase-like Gene Family AT4G02010 37.785 3.61e-57 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vifa2g05285 PK_Tyr_Ser-Thr 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05285 - - tpra:123923511 916.376