Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05267 ATGATTGCTACTGTTCTCCGTCGGTTGAGGGATCCCGACTCGGTTGTACGATCCGCTTGCGTCGACGCTGTTGCTGAGATGTCGTCGCACATCACTCGTCCTTCGTTCACCGTTGCGTTCCTGAGGCCGTTTATGGACGCGTTAACGCTGGAGCAGGACGTGAATGTGCAGATCGGCGCTTCGCTGTGCCTTGCGGCGGCTATTGATGCAGCGCCGGTGCCGGATGTTGAGTCGCTCCGGAGGATTACGCTTCCGAGGCTAGGGAAGCTTCTGAAGACTGACTCGTGTAAGGCGATAGCGGAAGCGAGTAAAGAGTGGGGAATGTTTCAAATTTTGAACCATGAGATTCCAAATGATGTTATAAGAAAGTTGCAAAGTGTTGGTAAAGAGTTCTTTGAGTTACCACAAGAGGAAAAAGAGGTTATTGCTAAACCTGTTGGATCGAATTCGATTGAAGGGTATGGGACTAGTCTTCAGAAAGAGGTGAATGGGAAGAAAGGTTGGGTGGATCATTTGTTTCATATCATTTGGCCACCTTCTTCTGTTAATTATCGTCTTTGGCCTAACAAACCTGCTTCTTACAGGTGCAAGCCATACATAGCTATGATTTGTCTTCAATTTGGTTTTGCTGGTATGAATATAATAACAAAAGTATCGCTCAACCGAGGAATGAGTCACTATGTTCTTGTTGTTTATAGACATGCTTTTGCTACAGCAGCTATTGCTCCATTCGCTATAGTTCTTGAGAGGAAGATAAGGCCAAGGATTACGTTTCTTATGTTCATGCAAATGTTTGTATTGGGACTCCTCGGGCCTGTGATTGATCAGAATCTATACTATGCTGGGTTGAAATTCACATCTCCAACATACTCTTGTGCTATTAGCAATATTCTCCCTGCAATGATTTTTTGTAATGGCTGTTATTTTCAGATTAAAGGTTCAATCCTTCTCATAATTGCTACCTTTGCTTGGTCTTCTTTCTTCATCCTCCAGGCAGTGACATTAAGACAATATTCAGCACAACTTTCACTGACAGCCATAAACATTGGTTTGGACATGAATTTATTAGCTGCAGCCTATGCTGGTATAATATCATCAGGTCTTACATATTATGTACAAGGAATTGTGATGCAAAAGAAAGGACCAGTTTTTGTGACTGCTTTTAGTCCTTTGATGATGATCATTGTAGCAATCATGGCCACTTTCATCCTTGCTGAAAAATTATATCTTGGAGGTGTTATTGGAGCAATTTTGATCGTAATAGGACTTTACTCCGTTCTATGGGGCAAAAACAAAGAAAACAAAGAGATTGAAGCGGAAACAAAAACAGAAAGAACGGAGTGTTGTGTAAAAATTTGGAGGCTGGTTATGTTAAGGGGAATTGGGTCTTCTTTTAGGATGAGTGTATATATCAGTATACTGATTATTTAG 1431 0.4172 MIATVLRRLRDPDSVVRSACVDAVAEMSSHITRPSFTVAFLRPFMDALTLEQDVNVQIGASLCLAAAIDAAPVPDVESLRRITLPRLGKLLKTDSCKAIAEASKEWGMFQILNHEIPNDVIRKLQSVGKEFFELPQEEKEVIAKPVGSNSIEGYGTSLQKEVNGKKGWVDHLFHIIWPPSSVNYRLWPNKPASYRCKPYIAMICLQFGFAGMNIITKVSLNRGMSHYVLVVYRHAFATAAIAPFAIVLERKIRPRITFLMFMQMFVLGLLGPVIDQNLYYAGLKFTSPTYSCAISNILPAMIFCNGCYFQIKGSILLIIATFAWSSFFILQAVTLRQYSAQLSLTAINIGLDMNLLAAAYAGIISSGLTYYVQGIVMQKKGPVFVTAFSPLMMIIVAIMATFILAEKLYLGGVIGAILIVIGLYSVLWGKNKENKEIEAETKTERTECCVKIWRLVMLRGIGSSFRMSVYISILII 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05267 476 SUPERFAMILY ARM repeat 3 101 IPR016024 -
Vifa2g05267 476 SUPERFAMILY Clavaminate synthase-like 90 195 - -
Vifa2g05267 476 PANTHER WAT1-RELATED PROTEIN 311 347 IPR030184 GO:0016020|GO:0022857
Vifa2g05267 476 Gene3D - 69 218 IPR027443 -
Vifa2g05267 476 Pfam non-haem dioxygenase in morphine synthesis N-terminal 92 188 IPR026992 -
Vifa2g05267 476 Pfam EamA-like transporter family 198 303 IPR000620 GO:0016020
Vifa2g05267 476 Pfam EamA-like transporter family 355 427 IPR000620 GO:0016020
Vifa2g05267 476 SUPERFAMILY Multidrug resistance efflux transporter EmrE 352 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05267 Vifa-Chr2 1569472831 1569476062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05267 193 449 Nodulin-like Gene Family AT2G40900 46.429 3.15e-101 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05267 - - jre:109021862 342.043