Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05260 ATGATTCGTAAAAATTCAGTTCAAGATATTTTGGCTGAGCGAGACATCCTTATATCTATTCGAAATCCTTTTGTGGTCCGTTTTTTCTATTCTTTCACATGTAGAGAAAATCTTTATTTAGTTATGGAGTATTTAAACGGTGGGGATCTCTATTCTATGTTGAGAAACCTAGGTTGCTTAGATGAAGATATGGCTCGTGTATATATTGCAGAAGTTGTAAGCATATTGGCTTTTGTATATTTGCATACCCAACATATAATTCACAGAGACTTGAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATTAAGTTAACAGACTTTGGACTCTCAAAAGTTGGGCTCATCAACAGCACCGATGATTTGTCAGCACCCTCATCTTTCGCTAATGGGTTTTTAGGCGATGATAAACCAAAATCTCGACATGTTTCAAAGAGGGAAGAACGTCAACAACAGTCAGTGGTTGGCACTCCAGATTATTTGGCACCCGAAATACTTCTGGGCATGGGACATGGTGCAACTGCAGATTGGTGGTCGGTGGGTGTCATACTTTATGAGCTTCTTGTGGGTGTTCCACCTTTTAATGCAGAACATCCACAGCAAATTTTTGATAACATAATTAACAGAGACATACAATGGCCAAAGTATCCTGAGGAGATCAGCTATGAAGCATATGATTTGATGAATAAATTGTTAATCGAAAACCCAGTACAAAGGTTAGGTACAACAGGAGCTTCAGAAGTTAAAGGCCATGCTTTCTTCAAGGACATTAATTGGGATACGCTAGCAAGGCAAAAGGCTATGTTCATACCATCGACTGAAGCTCTTGATACAAGTTATTTTATGAGCCGCTACATTTGGAATCCAGAGGATGAACACTGTGCTGGAGGTAGTGATTTTGATGACATTACTGAATCTTACAGCAGTGGTTCAGGCAGTGATTCATCGGGTGGAGATGTAAGAATACTTCTGAATATTAGTATTTTAGTATGTTAG 999 0.3874 MIRKNSVQDILAERDILISIRNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSMLRNLGCLDEDMARVYIAEVVSILAFVYLHTQHIIHRDLKPDNLLIGQDGHIKLTDFGLSKVGLINSTDDLSAPSSFANGFLGDDKPKSRHVSKREERQQQSVVGTPDYLAPEILLGMGHGATADWWSVGVILYELLVGVPPFNAEHPQQIFDNIINRDIQWPKYPEEISYEAYDLMNKLLIENPVQRLGTTGASEVKGHAFFKDINWDTLARQKAMFIPSTEALDTSYFMSRYIWNPEDEHCAGGSDFDDITESYSSGSGSDSSGGDVRILLNISILVC 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05260 332 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 283 - -
Vifa2g05260 332 MobiDBLite consensus disorder prediction 136 150 - -
Vifa2g05260 332 CDD STKc_MAST_like 1 260 - -
Vifa2g05260 332 MobiDBLite consensus disorder prediction 130 154 - -
Vifa2g05260 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Vifa2g05260 332 Pfam Protein kinase domain 5 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05260 332 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Vifa2g05260 332 FunFam Microtubule associated serine/threonine kinase 2 49 272 - -
Vifa2g05260 332 SMART serkin_6 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05260 332 Gene3D Phosphorylase Kinase; domain 1 1 282 - -
Vifa2g05260 332 Gene3D Transferase(Phosphotransferase) domain 1 49 273 - -
Vifa2g05260 332 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05260 Vifa-Chr2 1566980812 1566983906 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05260 1 312 AGC Kinase Gene Family AT5G62310 78.914 3.00e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vifa2g05260 Pkinase 7.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05260 - - gmx:100806311 571.622