Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05249 ATGGAACCGGAGCAACCTACCGTTACGGCGGTGCACGACGGAAGCGGCGACGACGGTGTAGTTGCATTAGGGGAAGGTTCTGTTAGCAACGAGAACAATAGGGATAGAGTGAAAGGACCGTGGTCTCCTGAAGAAGACGCCATTCTTAGTGGTCTGGTGAGTAAGTTTGGTGCTAGGAATTGGAGTTTGATTGCTCGGGGGATTTCGGGGAGATCCGGGAAGTCGTGTCGACTGAGGTGGTGTAATCAGCTTGATCCTGCTGTTAAGCGGAAGCCGTTTACTGATGAGGAAGACCGGATCATAGTTGCCGCTCATCGGATCCATGGAAACAAATGGGCGGCCATTGCCAGGATTCTGCCAGGAAGAACAGACAACGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGCCGGGGAGTTGAACGTGATAGGACTAAGATAGAATCAGGTAACACGGTGGAAGATATTAGCATGGAGAAAGCCAGAACATCATCAGAAGAAACACTATCCTGTGGAGATCTTAACTCATTGAAATCATCTGAAGGAAGAGATTTTAGCTCTAAGGAGATTGTGGACGATAGATATGAAGAGAAAGCCAGAACTGATCCGCAATTACACCATGAAGTCAGGGATCTGCCAATCGTTGAAATCAGGGATCCGCCGACCCTTTTTAAGCCTGTAGCACGTGTAAGTGCTTTTAACGTATATCACGCTTCCAATAGTTCACAGCCTTCAACATCAGTTCCGAGACCTGTTCCAATGCAAGGACCTATTCTACATTCGCAGAAATCAGATATGGAAATTTGTAAAATGCTCAACGGAACTTATGGCGACCGGTCAGTACCTCAACAATGTGGTCATGGATGCTGTTCTCCTCTAAATGGTAACACCTCAAAAAGCTCTTTGTTGGGCCCAGAATTCGTTGAATATTCGGAACCTCAATCTTTCCCAAGTTTTGAGCTGGCTGCAATAGCTACAGATATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAATAGTGTCAAAATAATGGGTGAAACTGCTGGCAGGGTTAATATCTAA 1068 0.4588 MEPEQPTVTAVHDGSGDDGVVALGEGSVSNENNRDRVKGPWSPEEDAILSGLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHRIHGNKWAAIARILPGRTDNAIKNHWNSTLRRRGVERDRTKIESGNTVEDISMEKARTSSEETLSCGDLNSLKSSEGRDFSSKEIVDDRYEEKARTDPQLHHEVRDLPIVEIRDPPTLFKPVARVSAFNVYHASNSSQPSTSVPRPVPMQGPILHSQKSDMEICKMLNGTYGDRSVPQQCGHGCCSPLNGNTSKSSLLGPEFVEYSEPQSFPSFELAAIATDISNLAWLKSGLENNSVKIMGETAGRVNI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05249 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 84 IPR017930 -
Vifa2g05249 355 SMART sant 37 86 IPR001005 -
Vifa2g05249 355 SMART sant 89 137 IPR001005 -
Vifa2g05249 355 MobiDBLite consensus disorder prediction 1 42 - -
Vifa2g05249 355 FunFam MYB transcription factor 38 89 - -
Vifa2g05249 355 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Vifa2g05249 355 Gene3D - 91 152 - -
Vifa2g05249 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Vifa2g05249 355 Pfam Myb-like DNA-binding domain 41 98 - -
Vifa2g05249 355 CDD SANT 92 135 IPR001005 -
Vifa2g05249 355 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Vifa2g05249 355 Gene3D - 37 89 - -
Vifa2g05249 355 CDD SANT 40 82 IPR001005 -
Vifa2g05249 355 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Vifa2g05249 355 PANTHER MYB PROTEIN-RELATED 38 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05249 Vifa-Chr2 1565392118 1565397358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05249 22 353 MYB Transcription Factor Family AT3G09230 49.415 2.51e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g05249 Myb_DNA-bind_6 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05249 K09422 - gmx:100813406 522.316