Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05248 ATGGCTCAAGCGCCGGGACGGAGCAGTAGCAGTAGAACGATCGGAGACTACTTCGTCGGGAAGCAGATTGGAGCCGGTTCGTTTTCGGTTGTGTGGCATGCGAGACACAAAATTCATGGAACTGAAGTTGCTATAAAAGAGATCGCTACGTTGAGGCTTAACAAGAAGTTGCAGGAGAGTCTCATGTCGGAGATTTACATCTTGAAAAGGATTGATCATCCTAATATTATTTCCTTGCACGATATCATTCAGGCTCCTGGGAAGATACATCTTGTGTTAGAGTATTGTAAAGGGGGAGATCTTTCTATGTACATTCAACGCCATGGAAGGGTACCAGAGGCAACTGCAAAGCATTTTATGCTTCAGCTGGCTGCTGGCCTTCAAGTTCTTAGGGACAATAACCTTATTCACCGAGATCTGAAACCACAGAATCTTCTTCTCTCCAGAAATGATGAGAAGTCAGTTTTGAAGATCGCTGACTTCGGATTTGCAAGATCTCTGCAACCGAGGGGCCTTGCAGAAACATTATGTGGTTCACCACTCTACATGGCTCCCGAAATCATGCAACTGCAGAAGTATGATGCCAAGGCAGATCTCTGGAGTGTTGGAGCAATCTTATATCAGTTTGTTACAGGGAAAACACCATTTACTGGAAACAATCAAATCCAGTTACTACAGAATATCATGAAATCGACAGAATTGCAATTTCCATCTGATAGTCAAGGTTTGTGTTCCGAGTGCAGAGATTTGTGCCAGAAATTACTACGCCGTAATCCAGTGGAACGTCTAACTTTTGAAGAATTCTTTAACCACCCATTCCTTAAACCGAAGCAAAGAGAACAGGATGAATCATTAAGGAGTAAAAGCTCTTCAAGGTTGGTAAGTGGGTTCTCTTCAACAGTGACCGATCCTTTGAGAAGAACTGAGGAAAATTATCAAGAGGATTGCTTACCTTTCATTCTAGATGATGAATCTAGTAGACCTGAAGGGAGTACGTTGCATTCAAAGAAGAAGTCCTCCATGAAGTCTACCTTTGGATTTGATCTAAATGCCAAACTAGAGTCAACTTCCATTTCTAATAATGTAACTTATGCTTCCAGATATAATAGTGTAACACAGAGACCTGAAATCGCTTCTAAAAGATTGGACAACCATAAAATTTCAGGACGAAATCTCACTAATCCTCTAGGATCACCAGAACAGATATTTGCAAACCCTTATCCAAAAGTTACAGATTCACTTGAGAATATTGATCAAGAGTATGTTCTTGTGTCTGGGCCCCCTATCGATGTTTCATCTTCTTCAGTGAATGCTTCAAAGCCCAGCCATTCCTTATTTAGGACAGGTAGTCAGGACTCTGCTCCTGGGACATCACATGGATCAATGGATACAGCTGATGAACAACCATCAACTAACTGTATGACAAGGGTGAAATCATTGCAAGATTATGCATCTGCCCTCAGAGAATTAGTTGATGAAAAGACTGTGGCTAGAAAGCAGTTAGAAGCATTTTCTATTGAGCTTGTGATTCTCGCCATTTGGAAGAAAGCACTGCACATGTGCCATACACAGGCTGCCTCAGCAATGGAAGGAAGTCCAAGTCAAGAAGCTTCAAGATATAGGAGGAGCACCAGCAAGAAGCTAGGTAGTCCCGATTCAGAAGATGAAAACACCCAAGGGCCAAAAGATTTATCATCTGAAATTGAAAGTGGATTTTTGAGGGAGTTTGAGCATGCCCAAGAACTTGCCAAAACCATTAAGCCTGGAAATACAGAGATGCCAGATGCAATGGAAACAATATTTCAAGCCGCCCTTGGTTTTGGGAAGCATGGTGGTGTAGAAGAGCTCTTGGGTAGTACAGATAGTGCATCTACATTGTATTCAAAAGCCGTTCGTCTACTGGTTTTCCTTCTTGTGGAAGGACCGTCCCTGATTCTCAACCCTCCATTTTCATTGACAAAATCAGACCGATACAGGCTTCGGAATTACATTGATATGCTTAATATCCGAGAAAGTTATACAAGGTCTCAGAGATCAACACTCCCTAAGGGTGATGATAGTCAGGGAGGAAAAGTTTTAGGGCTTTAG 2088 0.4215 MAQAPGRSSSSRTIGDYFVGKQIGAGSFSVVWHARHKIHGTEVAIKEIATLRLNKKLQESLMSEIYILKRIDHPNIISLHDIIQAPGKIHLVLEYCKGGDLSMYIQRHGRVPEATAKHFMLQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDEKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILYQFVTGKTPFTGNNQIQLLQNIMKSTELQFPSDSQGLCSECRDLCQKLLRRNPVERLTFEEFFNHPFLKPKQREQDESLRSKSSSRLVSGFSSTVTDPLRRTEENYQEDCLPFILDDESSRPEGSTLHSKKKSSMKSTFGFDLNAKLESTSISNNVTYASRYNSVTQRPEIASKRLDNHKISGRNLTNPLGSPEQIFANPYPKVTDSLENIDQEYVLVSGPPIDVSSSSVNASKPSHSLFRTGSQDSAPGTSHGSMDTADEQPSTNCMTRVKSLQDYASALRELVDEKTVARKQLEAFSIELVILAIWKKALHMCHTQAASAMEGSPSQEASRYRRSTSKKLGSPDSEDENTQGPKDLSSEIESGFLREFEHAQELAKTIKPGNTEMPDAMETIFQAALGFGKHGGVEELLGSTDSASTLYSKAVRLLVFLLVEGPSLILNPPFSLTKSDRYRLRNYIDMLNIRESYTRSQRSTLPKGDDSQGGKVLGL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05248 695 Coils Coil 487 507 - -
Vifa2g05248 695 FunFam Serine/threonine-protein kinase ATG1 9 315 - -
Vifa2g05248 695 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Vifa2g05248 695 MobiDBLite consensus disorder prediction 675 695 - -
Vifa2g05248 695 CDD STKc_ATG1_ULK_like 23 273 - -
Vifa2g05248 695 MobiDBLite consensus disorder prediction 540 564 - -
Vifa2g05248 695 MobiDBLite consensus disorder prediction 432 473 - -
Vifa2g05248 695 SMART serkin_6 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05248 695 SUPERFAMILY Protein kinase-like (PK-like) 12 286 IPR011009 -
Vifa2g05248 695 MobiDBLite consensus disorder prediction 526 564 - -
Vifa2g05248 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Vifa2g05248 695 Gene3D Transferase(Phosphotransferase) domain 1 8 343 - -
Vifa2g05248 695 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 8 603 IPR045269 GO:0004674|GO:0006914
Vifa2g05248 695 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05248 695 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05248 695 FunFam Non-specific serine/threonine protein kinase 2 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05248 Vifa-Chr2 1565271146 1565278789 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05248 14 274 CBL-interacting serine-threonine protein kinases AT2G30360 36.330 6.11e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vifa2g05248 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05248 K08269 - gmx:100791596 1087.02