Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05234 ATGGCTATTGTAAAGGAAGAAGGTGAACATGAATTGGCTCCTCCACCGCAGAAGAAAGAACCGTCTGAAAATGAGAAGAGGAAGAAGAAAATCGTGCCTGGGAGTTTGATGAAAGCTTTGATTCTACCCGGTGGCGGTGATTCTGGACCTTCAGATGGTGATCAGGTTATCTATCACTGGACAATTCGAACTTTGGATGGAGTTGTTGTGGAATCTACACGATCTGAACATGGAGGCAAGGGCATGCCGATAAGACATGTATTGGGTAAAAGCAAGATGCTATTGGGCTTGCTAGAAGGAATTCCAACAATGTTGAAGGGCGAAGTGGCAATGTTGAAGATGAAACCTCAGCTGCATTATGGTGAGGATGATTGTCCTATTTCTGCTCCTGATGGGTTTCCTAAGGATGATGATCTCCATTTTGAAATAGAGCTGATAGAGTTTTTTAAGGCCAAGGTTGTCACTGATGATTTGGAAGTGATTAAAAAGGTTGTACACGAAGGGCAGGGTTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAAGACAGCTACTGGGAAATTGATCAGGTCACAGAAAGAAGGAGAACCATACTTCTTTACATTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGGATCGGAACAATGGTTCGGGAAGAAAAAGCTGTTATATATGTTACAAGTCAGTATTTAACCGAGTCTCCTCTGATGCCTGTTGTAGAAGATTCTGAAGTCCAGTTTGAAGTGGAGCTTGTTCACTTTATTCAAGTGAGGGACGTGCTTGGAGATGGGCGTCTGATAAAACGTCGGATTCGTGATGGAAAAGGTGATTTTCCAATGGATTGCCCCCTTCATGACAGTCTACTTCATGTTCATTACAAGGGCACTGTTCTCGGTGAAGAAAAGAGGGTGTTCTATGACACAAGAGTTGATAACGATGGTCAACCATTGGATTTCTGCTCTGGAGAAGGGCTTGTACCAGAGGGATTTGAATTGTGTGTTCGTCTGATGCTACCAGGAGAGATGGCTCTAGTCACATGTCCACCAGACTATGCTTATGATAAGTTTCCAAGGCCTTCAAATGTTCCTGAGGGTGCTCATATTCAATGGGAAATTGAACTTCTATCTTTTGAAATGCCAAAGGACTGGACAGGAATGGACTTTAAAAGTATAATGTACGAAGCTGAAAATATCAGAAACAAGGGTAACAGGTTATTTAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGAGGAAGGAAAAGTTTTTTCTGATACACGTAATTTGCTACACCTGAATGTTGCTGCATGCTATCTAAAGCTGGGAGAATGCAGAAAGTCCATTGAGACTTGTAACAAGGTTTTAGAAGCAAATCCTGCGCACATCAAGGGTCTTTATCGTCGTGGAATGGCCTACATGGCTAATGGAGATTTTGACGAAGCAAGGGCTGATTTCAAAATGATGATGAAAGTCGATAAGTCAACTGCATCAGACGCAACAGCAGCCCTTATAAAACTTAAGCAGAAAGAGCAGGAAGTTGAGAAGAAAGCTCGGAAACAATTTAAAGGGCTATTTGACAAGAAGCCTGGAGAAATTGCAGAAGTTAACGCTAATGAAGATGAAGATCAGGTCACCCGTGAAAGCCAGAAAGATGGTGAGGTACATAAAGACATATCAGATGGAACGAACTCGGAGGATTCACATGAAGCTGTGCCTGATGCAGATCAAAGGGGTTGGTTCTCTCAATTTTGGCCAACCGGTAGTAGAATATTTTCATCTCTTGGACTTCAAAGATGTACCATACTATAA 1878 0.4185 MAIVKEEGEHELAPPPQKKEPSENEKRKKKIVPGSLMKALILPGGGDSGPSDGDQVIYHWTIRTLDGVVVESTRSEHGGKGMPIRHVLGKSKMLLGLLEGIPTMLKGEVAMLKMKPQLHYGEDDCPISAPDGFPKDDDLHFEIELIEFFKAKVVTDDLEVIKKVVHEGQGWESPREPYEVKAWISAKTATGKLIRSQKEGEPYFFTFGKSEVPKGLEMGIGTMVREEKAVIYVTSQYLTESPLMPVVEDSEVQFEVELVHFIQVRDVLGDGRLIKRRIRDGKGDFPMDCPLHDSLLHVHYKGTVLGEEKRVFYDTRVDNDGQPLDFCSGEGLVPEGFELCVRLMLPGEMALVTCPPDYAYDKFPRPSNVPEGAHIQWEIELLSFEMPKDWTGMDFKSIMYEAENIRNKGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDEEGKVFSDTRNLLHLNVAACYLKLGECRKSIETCNKVLEANPAHIKGLYRRGMAYMANGDFDEARADFKMMMKVDKSTASDATAALIKLKQKEQEVEKKARKQFKGLFDKKPGEIAEVNANEDEDQVTRESQKDGEVHKDISDGTNSEDSHEAVPDADQRGWFSQFWPTGSRIFSSLGLQRCTIL 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05234 625 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 262 IPR001179 GO:0003755
Vifa2g05234 625 PANTHER PEPTIDYLPROLYL ISOMERASE 154 261 - -
Vifa2g05234 625 MobiDBLite consensus disorder prediction 555 595 - -
Vifa2g05234 625 Gene3D - 264 389 IPR046357 GO:0003755
Vifa2g05234 625 Gene3D - 4 151 IPR046357 GO:0003755
Vifa2g05234 625 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 149 IPR001179 GO:0003755
Vifa2g05234 625 FunFam Peptidylprolyl isomerase 153 262 - -
Vifa2g05234 625 SUPERFAMILY TPR-like 400 541 IPR011990 GO:0005515
Vifa2g05234 625 Coils Coil 519 542 - -
Vifa2g05234 625 FunFam Peptidylprolyl isomerase 263 387 - -
Vifa2g05234 625 SUPERFAMILY FKBP-like 154 261 - -
Vifa2g05234 625 SUPERFAMILY FKBP-like 28 153 - -
Vifa2g05234 625 Gene3D - 152 263 IPR046357 GO:0003755
Vifa2g05234 625 FunFam Peptidylprolyl isomerase 390 546 - -
Vifa2g05234 625 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 146 IPR001179 GO:0003755
Vifa2g05234 625 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 174 259 IPR001179 GO:0003755
Vifa2g05234 625 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 294 382 IPR001179 GO:0003755
Vifa2g05234 625 SUPERFAMILY FKBP-like 267 394 - -
Vifa2g05234 625 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Vifa2g05234 625 FunFam Peptidylprolyl isomerase 10 152 - -
Vifa2g05234 625 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 293 385 IPR001179 GO:0003755
Vifa2g05234 625 SMART tpr_5 451 484 IPR019734 GO:0005515
Vifa2g05234 625 SMART tpr_5 485 518 IPR019734 GO:0005515
Vifa2g05234 625 SMART tpr_5 402 435 IPR019734 GO:0005515
Vifa2g05234 625 Gene3D Tetratricopeptide repeat domain 396 550 IPR011990 GO:0005515
Vifa2g05234 625 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g05234 625 Pfam Tetratricopeptide repeat 486 509 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05234 Vifa-Chr2 1559258576 1559269563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05234 50 550 Calmodulin-binding Proteins AT5G48570 30.078 7.79e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05234 - - tpra:123919523 1120.92