Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05228 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGTTGGTTCCACTCTCACCTCAATCCTTCTGTTCTTGATTCATCTGACCAAGAAAATGGTGGCAAGAGTGAAAAGAATTTGTGGCCTAGTTTTAGTGAGTATAGTTTGGAAGAATTGAAGGCTGCTACAGATGGATTCTCCTCAGACAACATAGTCTCTGAGCATGGTGAGAAAGCTCCAAATGTTGTCTATAAAGGGAAACTTGAGAATGGACAGTTTATCGCCATCAAACGTTTCAACAAGTTCGCTTGGCCCGATTCTCGCCAGTTCATTGAAGAATCTAAACAAGTGGGGAGTCTTAGAAGTGAACGTTTGGCGAATTTGATTGGTTGTTGCTATGAAGGGGATGAGAGGCTACTAGTGGCAGAGTTTATGCCACATGAAACTCTTGCTAAGCATCTCTTTCATTGGGAGGCACAGCCCATGAAATGGGCAATGAGGTTGAGGGTGGCATACTATTTAGCTCAAGCTCTTGAGTATTGCACAAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTACAGGATCTTGTTTGATCAGGATGGTAATCCTAGGTTATCTTGCTTTGGACTTATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACGCCTCCTGAGTACTTGAGAACAGGTAGAGTGACAGCAGAGAGTGTGGTTTACAGTTTTGGAACTCTGTTGCTTGATCTCTTGAGTGGTAAACATATTCCACCAAGCCATGCACTTGATCTTATTCGTGGCAAAAACTATTTGATGTTGATGGATTCTGCATTAGAGGGTCATTTTTCAAAGGATGATGGAACTGAGTTAGTTCGTTTGGCTTCTCGTTGTCTGCAATATGAAGCTCGCGAGAGACCAAATGTAAAGTCTCTTGTTGAAACTCTAATGTCTCTTCAGAAAGAAATCGAGGTTCCATCACATGTTCTGATGGGTCTCCAAACAGCAACATCAACAAAACCATTGTCATTGACATCTTTTGGTGAATCATGCTTGAGATTGGATCTTACTGCCATACATGCAATATTAGAGAAGACTGGTTACAAGGACGATGAAGGAATTGCCAATGAGCTTTCCTTTCAGTTGTGGACTAGTCAAATGCAAGAGACCTTGAATTTGAAGAAGCATGGAGATGCTGCTTTTAGAGCTAAGGACTTCGTCACCGCCATTGACTGCTACACACAATTCATAGATGGAGGGACCATGGTGTCACCTACAGTGTATGCAAGGCGCTGCTTGTCATATTTGATGAATGACATGCCACAGGAAGCTCTGGGGGATGCCATGCAAGCTCAAGTGGTATCTCCTGAATGGCCTACTGCTTTGTATCTTCAAGCAACTTGCCTTTTCAGCCTTGGAATGGAAAATGATGCACAGGAGACTCTCAAAGATGGGACTAACATGGAAGCTAAAAAGCATAAAAACTGA 1470 0.4272 MGARCSKFSFCWFHSHLNPSVLDSSDQENGGKSEKNLWPSFSEYSLEELKAATDGFSSDNIVSEHGEKAPNVVYKGKLENGQFIAIKRFNKFAWPDSRQFIEESKQVGSLRSERLANLIGCCYEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAYYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNYLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNVKSLVETLMSLQKEIEVPSHVLMGLQTATSTKPLSLTSFGESCLRLDLTAIHAILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDAAFRAKDFVTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDAMQAQVVSPEWPTALYLQATCLFSLGMENDAQETLKDGTNMEAKKHKN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05228 489 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Vifa2g05228 489 FunFam probable serine/threonine-protein kinase At4g35230 382 489 - -
Vifa2g05228 489 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Vifa2g05228 489 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05228 489 Gene3D Tetratricopeptide repeat domain 378 489 IPR011990 GO:0005515
Vifa2g05228 489 SUPERFAMILY Protein kinase-like (PK-like) 34 320 IPR011009 -
Vifa2g05228 489 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 21 488 IPR045845 GO:0004672|GO:0009742
Vifa2g05228 489 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Vifa2g05228 489 SUPERFAMILY TPR-like 385 478 IPR011990 GO:0005515
Vifa2g05228 489 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Vifa2g05228 489 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05228 Vifa-Chr2 1556343860 1556347167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05228 18 310 Glycoside Hydrolase AT3G07070 33.022 3.02e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vifa2g05228 PK_Tyr_Ser-Thr 5.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05228 - - gmx:100814477 917.531