Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05208 ATGTCTTCCTCCTCCGAAAGCCGTCGCAAATTTGACTCCAGATCTAGTAGTGGTCCAAACAGGAGGAGGTACAACGTGTTCTTGAGTTTCTGCGCTACAGATGCCGGACAGCTTGTTCCCCGTCTCTGTAGCGCTCTTAGTTGGGAACCTGGAATTGTTGTTTTTGGGGAAGACGAGAGGTTTCAACATAGGGAACATGTAGAGTCAGTGCTGAATGTAATTGGAGAATGCCAAATGGCTATTGTTGTATTTTCAATAAATTATACTAATTCCAGTTCGTGTATTCAAGAATTGGAGAAAATAACCGAGTGTTGTCGAACCTCCGATTTACGTGTTCTTCCCTTGTTTTATGATGTTGTTCATGCCTCCTACGGAAGTTTAAAGGAAGATATGTTTGGAGAGTCTTTTCCTAGTTTCCTTGATAGAATATCCATGAAGGAAATCTCTGAAAATGAAGATAAGTTCATGACTTGGGTGGCTTTGATAACTAAACCTACCGAATATTTAGAATCAATTGATCTCCTACACAAACCCACGCACATGTATGGAAATGTAAACATTGGGGAAATAGTTGAAGGTGTTACGTTTGTGATAAACAGAAGAAAGTTGTTGTTTAAGGCTTTCCCTGCACCGAGGGCAAAATCTAGTGTGCAAGATGTGGTTCAACTATTGAAACAATCAAAATCTCCTCTCCTACTAGGGATATGGGGGATGACAGGGATCGGTAAATCAACCATTGCCAAAACCACTTTTGCTCAAATTGGTCTTTACTTTGAATACGCGTGCTTCCTCCGAAACATTGCGGAACTTTGGAAAAGCAATATTGGTAGAGTTTCATTACTAGACAAACTTCTTTCTCATATTGACCGACCAACTAAAATACGTCTGCCCACAATTGAGTCAATGAAAGTGATCATAAAACAAAGTCTTCGACATAAAAGAATACTTCTTGTACTTGATGGTGTTGATAGATTGGAGCACCTACATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTGAAGGTAGCAAAATAATCATCACGACAAGAGACAGACATCTACTCAAGGAGCATGGAGTTGACCATATATATCAAGTGAAACTATTGGATGAAAGTAAGTCGCTCGAGGTTTTGAATTCGGGTGCATTCGGCCAAGCACAGAATCCCCGAGAAGATTTTGTTGAAGTTTCTAGACAACTAGTTCCTTATTGTGGGGGATTACCTCTTGCTCTTGAAGCCCTTGGGATGTTCTTGCGTGGAAAGGAAGTACTTGAATGGAAGGGTGTGTTGAGGAGTCTCCAAAGATTTTCCATTCCAGTTCCACGACTACTAAATACTCTAGAAAAGAGTGTTAGTAATTTGAGTAATGAAGAGAAATGCATATTCCTTGATATAGCACATTTCTTTATAGGGATGAACCAAAATGATGTACTCCAAACATTAAATAGGTCAACACAATCTGCAGCTCTTCAAATAAGTCTCCTTGAAGACAAGAGCTTTGTAACCATTGATGAGAATAACAAACTTGAAATGCCTGTTCTGCTACAAGCCATGGCAAGAGATATCATTAAGAAGGAATCAAGTAATAAGATTGATCAGCCAAAGACATACGATGTGTTTTTGAGTTTCAGAGGGGAAGACAACCGGGCAAAGTTCGTGTCACATCTCCATTCGTCTCTTCAAAATGCAGGGATTTATGTTTTCAAAGACGACAACGAGATTCAACGAGGAGATCAGATCTCATTCTCACTGTTGCAAGCAATTGGAGAGTCTAGAATTTCAATCGTTGTTTTGTCTACAAATTATGCTAATTCTAGATGGTGTATGCTAGAGTTGGAGAAGATCATGGAAATTGGCAGGGTCAAGGGTCTGGTGGTCGTGCCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCACCAGAAAGGTCTTTTTGGAAAAGCTTTTGAAGGTCTTATATCAACAACAATCTCGGTGGATAAATCCACTAAGAGTAATTGGAGAAAAGAACTCTTTGATATCGGTGGCATTGGAGGGTTTGTACTCGTAGATTCCAGGAATGAAAGTGGTGATATCAAGAATATTGTTGAACATGTTACTCGTTTGCTAGACAGAACAGAGTTATTTGTTGCTGAACATGCAGTGGGAATTGAATCTCGTGTGCAAGCCGCAACTAAGCTTTTAAACATCCAAAAAGCAGAAGATGTTTTACTTCTAGGGATATGGGGCATGGGGGGTATGGGAAAAACAACCATTGCCAAAGCCATTTATAATAAAATTGGGAGCAAATTTGAGGGAAAGAGCTTCCTTTTGAATATAAGGGAATTTTGGGAAATGGATACTAATCAAGTCTCATTACAACAACAGGTACTTTGTGATGTTTACAAAACAACTTCATTCAAGATACGTGACATTGAGTCAGGGAAAAATATATTGAAGCAAAGACTTGGCCAAAAAAGGGTTCTGTTTGTGCTTGATGATGTGAATGAACTGGACCAACTAAAGGCTTTGTGTGGAAGCCGCAAATGGTTTGGTTCAGGGAGTAGAATAATCATTACAACAAGAGATATGCATCTTCTTAGATCGTGTAGAGTTGATCAAGTGTATAAAATCGAAGAAATGGACGAAAGTGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAACCAAGTCCGGAAGAAGATTTTGCTACACCTTCATCCAATGTGGTTGCTTACTCTGGGAGATTGCCACTAGCACTTGAAGTCCTTGGCTCCTATTTGTCTGACTGTGAAATAACAGAGTGGCACAAAGTTTTGGAGAAGCTCAAATGTATCCCCCATGATCAAGTACAGAAGAAGCTAAGAGTAAGCTTCGATGGTTTAAAAGATGTTACGGAGCAACAAATATTTCTTGATATAGCTTGTTTTTTTATTGGGATGGACCGAAATGATGTCATACAAATATTAAATTCGTGTGGATTTTTTGCCGATATTGGAATTAAAGTCCTTGTAGAGCGAAGCCTTGTAACTGTTGACAACAAGAACAAACTTAGAATGCATGATTTGCTGAGAGACATGGGAAGACAAATAATATATGAGGAATCTCCATTTGATCCTGAGAACCGCAGTAGGTTGTGGCGCCGTGAGGAAGTGTTTGATATATTATCAAAGCAAAAGGGAACTGAAGCTGTCAAGGGTCTGACTCTGGAGTTTCCAGGAAAAAATACAGTTTGTCTGAATACTAATGCATTTAAGAAGATGAATAAACTCAGATTGCTTCAACTTGCTGGCGTACAGCTTAATGGACATTTTAAAAATCTTTCGGGAGATCTTAGGTGGTTGTACTGGCATGGATTTCCGTCAACTTACACTCCTGCAGGATTTCAGCAAGGAAGTCTAGTTGTTGTCGAATTAAAACATAGTAATCTCAAACAAATATGGAAGAAGAGCCAGATGCTAGAGAATCTAAAAATTCTTAATCTTAGTCATTCTCGGGATTTGACTGAAACCCCCGATTTTTCATGCTTGCCAAATCTTGAAAAGCTAGTACTCAAAGACTGTCCAAGTTTGTCTACGGTCTCCCATAGCATTGGATCTCTCCGTAAAATTCTTCTTATTAATTTGACAGACTGCACAGGTCTTCGAGAACTTCCTAGAAGCATCTATAAATTAAAATCTCTAGAAACTTTGATTCTTTCCGGATGTTCCATGATCAACAGATTGGAGGAAGACATGGAACAAATGGAATCATTGACAACCTTGATTGCAGATAAGACTGCAATAACAAAAGTGCCTTTTTCAATAGTAAGATCGAAAAACATTGGATACATTTCTTTATGTGGCTTTGAAGGATTTTCACGTGATGTATTTCCTTCTATCATTCGGTCTTGGATGTCACCATCAAAGAATTTGATATCTCTAGTTCAAACATATGTGCCCACATCATCTCTTGGTACTTTCAAGGACCTTCCAAAGCTTCGAAGTCTTTGTGTAGAGTGCGGCTCTAAACATCAACTAAGTCGAGATGTGGCAAATATTTTGGATGTATTAAAAGCTACAAATTGTCATAAATTGGATGCAAGGGCAACTACGTCACAAATCTATGATACATTTCCTTCTCCTTTAATTGATGATTGCCTTGGTGAAGTTCGCACTTCAGGGTCAAAGAATTACTTGAAATCTTTCTTAATTCAAATGGGAACGAAATGCCAAGTATCCAATATTGCCGAAGACAACATTATACAGACAGCAGACGGGACTTGGGATTCATCTTTGCTCCCCTGTGACAATATATCTGATTGGTTAAACTTCAGTTGCAAAGGTAGTTCTGTAATATTTGTTGTCCCGGCAATCAAAGGGTGTATCCTGAAGAGTATGATGTTGTTTGTCCGCTATTACTCTTCCCCAGACAACATAATATCAGAAGGTTGCGATGGTATGTTGGTCGTAAATTACACAAAGACAACCATTCAGGTCTATAAAAGAGATACACTAATCTCCTTTGAGGATGGTGATTGGCAAAGTATTACAGCAAATCTAGAACCTGGTAACGAAGTGGAGGTTATGGTTGTTTTTGGGGAGGGGTTCATTGTCGAGGAGACAACAATATATCTCTTATATGATGAACCAATCAACCAAGAAATGGAAAACTGTAATGCAGTAGATGAGGAGGATGTTATTGTTTATTATGGTCATGATGAGGAGGATGTTAGTGTATCTGGTGGTTATAATACTGATGTACCAGTGGAAAACATTGCTACTGGTCTTGGTCAAGATGAAAATATAAGTGAAGATAGGCGCATGCATGCAATGGATAAGAATTCTGATGATGTTGCCAATGTCATGGCAACAAATAAGAAACGTGCCTGCTGTTTCTGGTGGCGGTGA 4869 0.3908 MSSSSESRRKFDSRSSSGPNRRRYNVFLSFCATDAGQLVPRLCSALSWEPGIVVFGEDERFQHREHVESVLNVIGECQMAIVVFSINYTNSSSCIQELEKITECCRTSDLRVLPLFYDVVHASYGSLKEDMFGESFPSFLDRISMKEISENEDKFMTWVALITKPTEYLESIDLLHKPTHMYGNVNIGEIVEGVTFVINRRKLLFKAFPAPRAKSSVQDVVQLLKQSKSPLLLGIWGMTGIGKSTIAKTTFAQIGLYFEYACFLRNIAELWKSNIGRVSLLDKLLSHIDRPTKIRLPTIESMKVIIKQSLRHKRILLVLDGVDRLEHLHALCGSREWFGEGSKIIITTRDRHLLKEHGVDHIYQVKLLDESKSLEVLNSGAFGQAQNPREDFVEVSRQLVPYCGGLPLALEALGMFLRGKEVLEWKGVLRSLQRFSIPVPRLLNTLEKSVSNLSNEEKCIFLDIAHFFIGMNQNDVLQTLNRSTQSAALQISLLEDKSFVTIDENNKLEMPVLLQAMARDIIKKESSNKIDQPKTYDVFLSFRGEDNRAKFVSHLHSSLQNAGIYVFKDDNEIQRGDQISFSLLQAIGESRISIVVLSTNYANSRWCMLELEKIMEIGRVKGLVVVPVFYEVDPSEVRHQKGLFGKAFEGLISTTISVDKSTKSNWRKELFDIGGIGGFVLVDSRNESGDIKNIVEHVTRLLDRTELFVAEHAVGIESRVQAATKLLNIQKAEDVLLLGIWGMGGMGKTTIAKAIYNKIGSKFEGKSFLLNIREFWEMDTNQVSLQQQVLCDVYKTTSFKIRDIESGKNILKQRLGQKRVLFVLDDVNELDQLKALCGSRKWFGSGSRIIITTRDMHLLRSCRVDQVYKIEEMDESESLELFSWHAFKQPSPEEDFATPSSNVVAYSGRLPLALEVLGSYLSDCEITEWHKVLEKLKCIPHDQVQKKLRVSFDGLKDVTEQQIFLDIACFFIGMDRNDVIQILNSCGFFADIGIKVLVERSLVTVDNKNKLRMHDLLRDMGRQIIYEESPFDPENRSRLWRREEVFDILSKQKGTEAVKGLTLEFPGKNTVCLNTNAFKKMNKLRLLQLAGVQLNGHFKNLSGDLRWLYWHGFPSTYTPAGFQQGSLVVVELKHSNLKQIWKKSQMLENLKILNLSHSRDLTETPDFSCLPNLEKLVLKDCPSLSTVSHSIGSLRKILLINLTDCTGLRELPRSIYKLKSLETLILSGCSMINRLEEDMEQMESLTTLIADKTAITKVPFSIVRSKNIGYISLCGFEGFSRDVFPSIIRSWMSPSKNLISLVQTYVPTSSLGTFKDLPKLRSLCVECGSKHQLSRDVANILDVLKATNCHKLDARATTSQIYDTFPSPLIDDCLGEVRTSGSKNYLKSFLIQMGTKCQVSNIAEDNIIQTADGTWDSSLLPCDNISDWLNFSCKGSSVIFVVPAIKGCILKSMMLFVRYYSSPDNIISEGCDGMLVVNYTKTTIQVYKRDTLISFEDGDWQSITANLEPGNEVEVMVVFGEGFIVEETTIYLLYDEPINQEMENCNAVDEEDVIVYYGHDEEDVSVSGGYNTDVPVENIATGLGQDENISEDRRMHAMDKNSDDVANVMATNKKRACCFWWR 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05208 1622 SUPERFAMILY Toll/Interleukin receptor TIR domain 527 670 IPR035897 -
Vifa2g05208 1622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 967 IPR027417 -
Vifa2g05208 1622 Gene3D - 201 361 IPR027417 -
Vifa2g05208 1622 Gene3D - 701 868 IPR027417 -
Vifa2g05208 1622 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 120 IPR035897 -
Vifa2g05208 1622 ProSiteProfiles TIR domain profile. 534 702 IPR000157 GO:0007165
Vifa2g05208 1622 ProSiteProfiles TIR domain profile. 22 147 IPR000157 GO:0007165
Vifa2g05208 1622 SUPERFAMILY L domain-like 1012 1326 - -
Vifa2g05208 1622 Gene3D Ribonuclease Inhibitor 1054 1373 IPR032675 -
Vifa2g05208 1622 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 536 1357 IPR044974 GO:0006952
Vifa2g05208 1622 PRINTS Disease resistance protein signature 1145 1161 - -
Vifa2g05208 1622 PRINTS Disease resistance protein signature 737 752 - -
Vifa2g05208 1622 PRINTS Disease resistance protein signature 814 828 - -
Vifa2g05208 1622 PRINTS Disease resistance protein signature 907 921 - -
Vifa2g05208 1622 FunFam Disease resistance protein (TIR-NBS-LRR class) 532 704 - -
Vifa2g05208 1622 Pfam NB-ARC domain 215 438 IPR002182 GO:0043531
Vifa2g05208 1622 Pfam NB-ARC domain 720 942 IPR002182 GO:0043531
Vifa2g05208 1622 Gene3D - 872 956 IPR042197 -
Vifa2g05208 1622 Gene3D - 367 451 IPR042197 -
Vifa2g05208 1622 SMART till_3 535 676 IPR000157 GO:0007165
Vifa2g05208 1622 SMART till_3 23 165 IPR000157 GO:0007165
Vifa2g05208 1622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 464 IPR027417 -
Vifa2g05208 1622 SMART AAA_5 229 369 IPR003593 GO:0016887
Vifa2g05208 1622 SMART AAA_5 734 871 IPR003593 GO:0016887
Vifa2g05208 1622 Gene3D - 17 198 IPR035897 -
Vifa2g05208 1622 Gene3D - 529 700 IPR035897 -
Vifa2g05208 1622 Pfam TIR domain 24 126 IPR000157 GO:0007165
Vifa2g05208 1622 Pfam TIR domain 536 699 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05208 Vifa-Chr2 1550434331 1550448118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05208 233 529 WRKY Transcription Factor Family AT4G12020 32.890 5.00e-35 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05208 - - mtr:11411578 2190.62