Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05207 ATGTCTTCCTCCTCCGAAAGCCGTCGCAAATTTGACTCCAGATCTAGTAGTGGTCCAAACAGGAGGAGGTACAACGTGTTCTTGAGTTTCTGCGCTACAGATGCCGGACAGCTTGTTCCCCGTCTCTGTAGCGCTCTTAGTTGGGAACCTGGAATTGTTGTTTTTGGGGAAGACGAGAGGTTTCAACATAGGGAACATGTAGAGTCAGTGCTGAATGTAATTGGAGAATGCCAAATGGCTATTGTTGTATTTTCAATAAATTATACTAATTCCAGTTCGTGTATTCAAGAATTGGAGAAAATAACCGAGTGTTGTCGAACCTCCGATTTACGTGTTCTTCCCTTGTTTTATGATGTTGTTCATGCCTCCTACGGAAGTTTAAAGGAAGATATGTTTGGAGAGTCTTTTCCTAGTTTCCTTGATAGAATATCCATGAAGGAAATCTCTGAAAATGAAGATAAGTTCATGACTTGGGTGGCTTTGATAACTAAACCTACCGAATATTTAGAATCAATTGATCTCCTACACAAACCCACGCACATGTATGGAAATGTAAACATTGGGGAAATAGTTGAAGGTGTTACGTTTGTGATAAACAGAAGAAAGTTGTTGTTTAAGGCTTTCCCTGCACCGAGGGCAAAATCTAGTGTGCAAGATGTGGTTCAACTATTGAAACAATCAAAATCTCCTCTCCTACTAGGGATATGGGGGATGACAGGGATCGGTAAATCAACCATTGCCAAAACCACTTTTGCTCAAATTGGTCTTTACTTTGAATACGCGTGCTTCCTCCGAAACATTGCGGAACTTTGGAAAAGCAATATTGGTAGAGTTTCATTACTAGACAAACTTCTTTCTCATATTGACCGACCAACTAAAATACGTCTGCCCACAATTGAGTCAATGAAAGTGATCATAAAACAAAGTCTTCGACATAAAAGAATACTTCTTGTACTTGATGGTGTTGATAGATTGGAGCACCTACATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTGAAGGTAGCAAAATAATCATCACGACAAGAGACAGACATCTACTCAAGGAGCATGGAGTTGACCATATATATCAAGTGAAACTATTGGATGAAAGTAAGTCGCTCGAGGTTTTGAATTCGGGTGCATTCGGCCAAGCACAGAATCCCCGAGAAGATTTTGTTGAAGTTTCTAGACAACTAGTTCCTTATTGTGGGGGATTACCTCTTGCTCTTGAAGCCCTTGGGATGTTCTTGCGTGGAAAGGAAGTACTTGAATGGAAGGGTGTGTTGAGGAGTCTCCAAAGATTTTCCATTCCAGTTCCACGACTACTAAATACTCTAGAAAAGAGTGTTAGTAATTTGAGTAATGAAGAGAAATGCATATTCCTTGATATAGCACATTTCTTTATAGGGATGAACCAAAATGATGTACTCCAAACATTAAATAGGTCAACACAATCTGCAGCTCTTCAAATAAGTCTCCTTGAAGACAAGAGCTTTGTAACCATTGATGAGAATAACAAACTTGAAATGCCTGTTCTGCTACAAGCCATGGCAAGAGATATCATTAAGAAGGAATCAAGTAATAAGATTGATCAGCCAAAGACATACGATGTGTTTTTGAGTTTCAGAGGGGAAGACAACCGGGCAAAGTTCGTGTCACATCTCCATTCGTCTCTTCAAAATGCAGGGATTTATGTTTTCAAAGACGACAACGAGATTCAACGAGGAGATCAGATCTCATTCTCACTGTTGCAAGCAATTGGAGAGTCTAGAATTTCAATCGTTGTTTTGTCTACAAATTATGCTAATTCTAGATGGTGTATGCTAGAGTTGGAGAAGATCATGGAAATTGGCAGGGTCAAGGGTCTGGTGGTCGTGCCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCACCAGAAAGGTCTTTTTGGAAAAGCTTTTGAAGGTCTTATATCAACAACAATCTCGGTGGATAAATCCACTAAGAGTAATTGGAGAAAAGAACTCTTTGATATCGGTGGCATTGGAGGGAATGAAAGTGGTGATATCAAGAATATTGTTGAACATGTTACTCGTTTGCTAGACAGAACAGAGTTATTTGTTGCTGAACATGCAGTGGGAATTGAATCTCGTGTGCAAGCCGCAACTAAGCTTTTAAACATCCAAAAAGCAGAAGATGTTTTACTTCTAGGGATATGGGGCATGGGGGGTATGGGAAAAACAACCATTGCCAAAGCCATTTATAATAAAATTGGGAGCAAATTTGAGGGAAAGAGCTTCCTTTTGAATATAAGGGAATTTTGGGAAATGGATACTAATCAAGTCTCATTACAACAACAGGTACTTTGTGATGTTTACAAAACAACTTCATTCAAGATACGTGACATTGAGTCAGGGAAAAATATATTGAAGCAAAGACTTGGCCAAAAAAGGGTTCTGTTTGTGCTTGATGATGTGAATGAACTGGACCAACTAAAGGCTTTGTGTGGAAGCCGCAAATGGTTTGGTTCAGGGAGTAGAATAATCATTACAACAAGAGATATGCATCTTCTTAGATCGTGTAGAGTTGATCAAGTGTATAAAATCGAAGAAATGGACGAAAGTGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAACCAAGTCCGGAAGAAGATTTTGCTACACCTTCATCCAATGTGGTTGCTTACTCTGGGAGATTGCCACTAGCACTTGAAGTCCTTGGCTCCTATTTGTCTGACTGTGAAATAACAGAGTGGCACAAAGTTTTGGAGAAGCTCAAATGTATCCCCCATGATCAAGTACAGAAGAAGCTAAGAGTAAGCTTCGATGGTTTAAAAGATGTTACGGAGCAACAAATATTTCTTGATATAGCTTGTTTTTTTATTGGGATGGACCGAAATGATGTCATACAAATATTAAATTCGTGTGGATTTTTTGCCGATATTGGAATTAAAGTCCTTGTAGAGCGAAGCCTTGTAACTGTTGACAACAAGAACAAACTTAGAATGCATGATTTGCTGAGAGACATGGGAAGACAAATAATATATGAGGAATCTCCATTTGATCCTGAGAACCGCAGTAGGTTGTGGCGCCGTGAGGAAGTGTTTGATATATTATCAAAGCAAAAGGGAACTGAAGCTGTCAAGGGTCTGACTCTGGAGTTTCCAGGAAAAAATACAGTTTGTCTGAATACTAATGCATTTAAGAAGATGAATAAACTCAGATTGCTTCAACTTGCTGGCGTACAGCTTAATGGACATTTTAAAAATCTTTCGGGAGATCTTAGGTGGTTGTACTGGCATGGATTTCCGTCAACTTACACTCCTGCAGGATTTCAGCAAGGAAGTCTAGTTGTTGTCGAATTAAAACATAGTAATCTCAAACAAATATGGAAGAAGAGCCAGATGCTAGAGAATCTAAAAATTCTTAATCTTAGTCATTCTCGGGATTTGACTGAAACCCCCGATTTTTCATGCTTGCCAAATCTTGAAAAGCTAGTACTCAAAGACTGTCCAAGTTTGTCTACGGTCTCCCATAGCATTGGATCTCTCCGTAAAATTCTTCTTATTAATTTGACAGACTGCACAGGTCTTCGAGAACTTCCTAGAAGCATCTATAAATTAAAATCTCTAGAAACTTTGATTCTTTCCGGATGTTCCATGATCAACAGATTGGAGGAAGACATGGAACAAATGGAATCATTGACAACCTTGATTGCAGATAAGACTGCAATAACAAAAGTGCCTTTTTCAATAGTAAGATCGAAAAACATTGGATACATTTCTTTATGTGGCTTTGAAGGATTTTCACGTGATGTATTTCCTTCTATCATTCGGTCTTGGATGTCACCATCAAAGAATTTGATATCTCTAGTTCAAACATATGTGCCCACATCATCTCTTGGTACTTTCAAGGACCTTCCAAAGCTTCGAAGTCTTTGTGTAGAGTGCGGCTCTAAACATCAACTAAGTCGAGATGTGGCAAATATTTTGGATGTATTAAAAGCTACAAATTGTCATAAATTGGATGCAAGGGCAACTACGTCACAAATCTATGATACATTTCCTTCTCCTTTAATTGATGATTGCCTTGGTGAAGTTCGCACTTCAGGGTCAAAGAATTACTTGAAATCTTTCTTAATTCAAATGGGAACGAAATGCCAAGTATCCAATATTGCCGAAGACAACATTATACAGACAGCAGACGGGACTTGGGATTCATCTTTGCTCCCCTGTGACAATATATCTGATTGGTTAAACTTCAGTTGCAAAGGTAGTTCTGTAATATTTGTTGTCCCGGCAATCAAAGGGTGTATCCTGAAGAGTATGATGTTGTTTGTCCGCTATTACTCTTCCCCAGACAACATAATATCAGAAGGTTGCGATGGTATGTTGGTCGTAAATTACACAAAGACAACCATTCAGGTCTATAAAAGAGATACACTAATCTCCTTTGAGGATGGTGATTGGCAAAGTATTACAGCAAATCTAGAACCTGGTAACGAAGTGGAGGTTATGGTTGTTTTTGGGGAGGGGTTCATTGTCGAGGAGACAACAATATATCTCTTATATGATGAACCAATCAACCAAGAAATGGAAAACTGTAATGCAGTAGATGAGGAGGATGTTATTGTTTATTATGGTCATGATGAGGAGGATGTTAGTGTATCTGGTGGTTATAATACTGATGTACCAGTGGAAAACATTGCTACTGGTCTTGGTCAAGATGAAAATATAAGTGAAGATAGGCGCATGCATGCAATGGATAAGAATTCTGATGATGTTGCCAATGTCATGGCAACAAATAAGAAACGTGCCTGCTGTTTCTGGTGGCGGTGA 4848 0.3907 MSSSSESRRKFDSRSSSGPNRRRYNVFLSFCATDAGQLVPRLCSALSWEPGIVVFGEDERFQHREHVESVLNVIGECQMAIVVFSINYTNSSSCIQELEKITECCRTSDLRVLPLFYDVVHASYGSLKEDMFGESFPSFLDRISMKEISENEDKFMTWVALITKPTEYLESIDLLHKPTHMYGNVNIGEIVEGVTFVINRRKLLFKAFPAPRAKSSVQDVVQLLKQSKSPLLLGIWGMTGIGKSTIAKTTFAQIGLYFEYACFLRNIAELWKSNIGRVSLLDKLLSHIDRPTKIRLPTIESMKVIIKQSLRHKRILLVLDGVDRLEHLHALCGSREWFGEGSKIIITTRDRHLLKEHGVDHIYQVKLLDESKSLEVLNSGAFGQAQNPREDFVEVSRQLVPYCGGLPLALEALGMFLRGKEVLEWKGVLRSLQRFSIPVPRLLNTLEKSVSNLSNEEKCIFLDIAHFFIGMNQNDVLQTLNRSTQSAALQISLLEDKSFVTIDENNKLEMPVLLQAMARDIIKKESSNKIDQPKTYDVFLSFRGEDNRAKFVSHLHSSLQNAGIYVFKDDNEIQRGDQISFSLLQAIGESRISIVVLSTNYANSRWCMLELEKIMEIGRVKGLVVVPVFYEVDPSEVRHQKGLFGKAFEGLISTTISVDKSTKSNWRKELFDIGGIGGNESGDIKNIVEHVTRLLDRTELFVAEHAVGIESRVQAATKLLNIQKAEDVLLLGIWGMGGMGKTTIAKAIYNKIGSKFEGKSFLLNIREFWEMDTNQVSLQQQVLCDVYKTTSFKIRDIESGKNILKQRLGQKRVLFVLDDVNELDQLKALCGSRKWFGSGSRIIITTRDMHLLRSCRVDQVYKIEEMDESESLELFSWHAFKQPSPEEDFATPSSNVVAYSGRLPLALEVLGSYLSDCEITEWHKVLEKLKCIPHDQVQKKLRVSFDGLKDVTEQQIFLDIACFFIGMDRNDVIQILNSCGFFADIGIKVLVERSLVTVDNKNKLRMHDLLRDMGRQIIYEESPFDPENRSRLWRREEVFDILSKQKGTEAVKGLTLEFPGKNTVCLNTNAFKKMNKLRLLQLAGVQLNGHFKNLSGDLRWLYWHGFPSTYTPAGFQQGSLVVVELKHSNLKQIWKKSQMLENLKILNLSHSRDLTETPDFSCLPNLEKLVLKDCPSLSTVSHSIGSLRKILLINLTDCTGLRELPRSIYKLKSLETLILSGCSMINRLEEDMEQMESLTTLIADKTAITKVPFSIVRSKNIGYISLCGFEGFSRDVFPSIIRSWMSPSKNLISLVQTYVPTSSLGTFKDLPKLRSLCVECGSKHQLSRDVANILDVLKATNCHKLDARATTSQIYDTFPSPLIDDCLGEVRTSGSKNYLKSFLIQMGTKCQVSNIAEDNIIQTADGTWDSSLLPCDNISDWLNFSCKGSSVIFVVPAIKGCILKSMMLFVRYYSSPDNIISEGCDGMLVVNYTKTTIQVYKRDTLISFEDGDWQSITANLEPGNEVEVMVVFGEGFIVEETTIYLLYDEPINQEMENCNAVDEEDVIVYYGHDEEDVSVSGGYNTDVPVENIATGLGQDENISEDRRMHAMDKNSDDVANVMATNKKRACCFWWR 1615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05207 1615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 464 IPR027417 -
Vifa2g05207 1615 ProSiteProfiles TIR domain profile. 22 147 IPR000157 GO:0007165
Vifa2g05207 1615 SUPERFAMILY L domain-like 1005 1319 - -
Vifa2g05207 1615 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 536 1350 IPR044974 GO:0006952
Vifa2g05207 1615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 960 IPR027417 -
Vifa2g05207 1615 SUPERFAMILY Toll/Interleukin receptor TIR domain 527 668 IPR035897 -
Vifa2g05207 1615 Pfam TIR domain 536 691 IPR000157 GO:0007165
Vifa2g05207 1615 Pfam TIR domain 24 126 IPR000157 GO:0007165
Vifa2g05207 1615 Gene3D - 17 198 IPR035897 -
Vifa2g05207 1615 Gene3D - 201 361 IPR027417 -
Vifa2g05207 1615 Gene3D - 695 861 IPR027417 -
Vifa2g05207 1615 Gene3D Ribonuclease Inhibitor 1047 1366 IPR032675 -
Vifa2g05207 1615 Gene3D - 865 949 IPR042197 -
Vifa2g05207 1615 Gene3D - 367 451 IPR042197 -
Vifa2g05207 1615 SMART AAA_5 727 864 IPR003593 GO:0016887
Vifa2g05207 1615 SMART AAA_5 229 369 IPR003593 GO:0016887
Vifa2g05207 1615 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 120 IPR035897 -
Vifa2g05207 1615 Pfam NB-ARC domain 713 935 IPR002182 GO:0043531
Vifa2g05207 1615 Pfam NB-ARC domain 215 438 IPR002182 GO:0043531
Vifa2g05207 1615 Gene3D - 530 694 IPR035897 -
Vifa2g05207 1615 PRINTS Disease resistance protein signature 807 821 - -
Vifa2g05207 1615 PRINTS Disease resistance protein signature 900 914 - -
Vifa2g05207 1615 PRINTS Disease resistance protein signature 1138 1154 - -
Vifa2g05207 1615 PRINTS Disease resistance protein signature 730 745 - -
Vifa2g05207 1615 SMART till_3 535 676 IPR000157 GO:0007165
Vifa2g05207 1615 SMART till_3 23 165 IPR000157 GO:0007165
Vifa2g05207 1615 ProSiteProfiles TIR domain profile. 534 684 IPR000157 GO:0007165
Vifa2g05207 1615 FunFam Disease resistance protein (TIR-NBS-LRR class) 532 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05207 Vifa-Chr2 1550434331 1550448118 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05207 233 529 WRKY Transcription Factor Family AT4G12020 32.890 4.37e-35 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05207 - - mtr:11411578 2171.36