Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05204 ATGTCTACTACTGATACTACTGCTAATCCAAAGGGGAAGAAGAGCTACGATCTCTACTTGAGTTTCTGCGGTGTTCACGACGATGTTCCTTTTGTTTTGAAATTCCGTGAGGCTCTTTCTTCCTATGTTCCAGAAGCTCTTATTTTCTTTGACTTTGTCAAGCTTCGACATATTGGTCGGGTAACCGTAACCGCGCCTTCAGAGTTATCTCTTAATGTAATTCAAGACTGCAAAATGGTCATAATCATACTTTCAAGAAATTATACTAATTCACAATCGTGTCTTCAAGAACTCGAGTTCATAACCCAGTGTTGCCTAACTACACCTGCTCTTATTGTTCTGCCTGTCTTGTATCCCATCGAGCCAAGTTTGCAAATAGGTATATTTGGACGGCCTTTTCACAACTTTCTCGATAGAGTTTCGATCAAAGAAATCTTCCAAGGTGAAGACAAGATCATGACTTTGGTGGAAGCTATGAGTAAATCTACCCAATATCCAACCGATTTCGCACCCACCGACGGGGACGAGTATGATTGTGTCAAGAGTGTAGTTGATCGTGTTATTTCTGTGATATACAAAAAAAGACCAGAATTGTCAAGGACTTTCTATACACCTAGTGTAAAATCTAGTGTGCAAGATGTGATTCAACTGTTGAAACAATCAAAATCTCCTCTCGTAATAGGGATTTGGGGGATAGCAGGAATTGGTAAAACAACCATTGCCAAAACCATTTATGATCTGATTGGTCCCTATTTTGAGGGCAAGTGCATGCTCCTTAATGTTGGTGGAGTTTGGGGACGAAATAACGGTCCAGTTTCTTTACAGGAAGAGCTTCTTTTTCATGTCAACAAAGCCACTGGATTTGAAAAAGTGACTTTAAAAAGAAACCTTCGAAATAAAAGGGTACTTGTTATACTTGAAGATGTTAATAAATTGGAGCAGCTAAATGCGTTGTGTGGAAGTCGTAACTGGTTTGGTGCAGGTAGCAAAATAATCATCACGACAAGAGATAGACGTTTACTCAAGGAGTATGGAGTTGACCATATATATAGAGTGAAAGAACTGGATGAAAGTGAATCGCTTGATGTTTTCAAGTGGGGTGCATTCGGCAAAGAAACAAGTCCAGAAAATTTTGATGAACTTTCCAGACAGGTAGTTGCTTATTCTGGGGGATGGCCTCTTGCTCTTATAGCCCTTGGGAGGCTTTTGCATGGAAAGGAAGCCCTTCAGTGGGAAGGTGTGTTATGGAGTCTCAAAAATTTTTCTATTCCGGCTCCACGACTACTGAATATTCTAGAAAAGAGTTTTAATGAGTTGAGTGATAACGAGAAACAGACATTCCTGGATATAGCAAGTTTCTTTATTGGGAAGAACCAAAATGATGTACTCCAAACGTTAAATAGGTCAACGCAAAGGGCGGCTTTTCAAATAAGCCTTCTTGAAGACAAGAGCCTTGTTGCCATCGATGAGAATAACAAGCTTGAAATGCATATTCTCCTACAAGCCATGGCCAGAGATATCATTAAAAGAGAATCAAGCAGTAGGACTAATCAGGCCAAGATGTACGACGTGTTCTTGAGTTTCAGAGGGGAAGACAGTCGTGCAAAGTTCATGTCACATCTCTATTCTTCTCTTCAAAATGCAGAGTTGGAAAGGATCATGGAAATTAGCAGAGCCAGGGGACTGGATGTTGTGCCAGTGTTCTATGAGGTAGATCCCGCTGAAGTACGTCATCAGGAAGGTCAGTTTGGGAAAGCTTTTGAAGAACTTAGATCAACAACCTCAGTGAATGAATCCACAAAGACTAACTGGAGAAGAGACCTTTTTGATATTGGTAGCAAAGCAGGGAATGAAAGTGGAGATGTCAAGAATATTGTTGAAAGTGTCTCCCGTTTGCTAGATAGGACAGAGTTATTTGTTGCTGAACATCAAGTAGGTGTAGAATCCCGTGTGGAAGCAGCAACTAAACTACTAGATATCCAAAAATCAGAAGATGTTTTAGTTCTTGGGATATGGGGAATGGGGGGCATGGGTAAAACAACCATTGCAAAAGCAATATATAATCAAATTGGAAGCAAGTTTGAGGGAAAGAGCTTCCTTCTGAATATAAGGGAAATTTGGGAGACAAACAATCAAGTTTCTTTACAGCAACAAGTACTCGGTGATATTTACAAAACAATGACATTCAAGATACGTGACATCGAATCTGGGAAAATTATCTTGAAGGAAAGACTTTCCCAAAATAGGATACTTTTTGTACTTGATGATGTGAATGAAGTAGACCAACTAAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTCCGGGGAGTAGAATAATTATCACAACAAGAGATTTGCATATTCTTAATTCGTGTAGAGTTGATCAAGTGCATAGAATAGAAGAAATGGACGGAAATGAATCTCTTGAGCTTTTTTGTTGGCATGCATTCAAGCAATCAAGACCGACAAAAGATTTTGCTAGACATTCAACAGATGTGATTGCTTATTCCGGGGGATTGCCACTAGCACTTCAAGTCCTTGGGTCATATTTGTCTGACTGTGAAATACCAGTGTGGCAGAAAGTTTTGGAAAAACTAAAATGTATTCCCCATAATCAAGTACATAAGAAGCTAAAAGTAAGTTTTGATGGTTTAAAAGATATCACAGAGAAACAAGCATTCCTTGATATAGCTTGTTTTTTTATTGGAATGGACCGAAATGATGTAACACAAATATTAAACGGGTGTGGATTTTTTGCTGATATTGGAATTAAAGTTCTTATTGAGCGAAGTCTTGTAACTGTTGACAATAGGAACAAGCTTCAAATGCATGATTTGTTGAGAGACATGGGAAGACAAATAATTTATGAGGAATCACCATTTGATCTTGAGAAGCGCAGTAGGTTGTGGCGTCCTGAAGAAGTGTTTGACATACTATCAAAGTATACGGGAACAAAAGCTGTCAAGGGACTGGCTTTAGAGTTTCCAAAAACAAACAAAGTTTGTCTAGATACCAAAGCATTTAAGAAGATGAATAAACTCAGATTACTTCAACTTGCTCGGAAAGGAAGTTTAGTTGCTATGGAGTTAAAATATAGTAATCTCAAATATTCATGGAATTGGAGCCAAAAGATGTTAGAGAATCTAAAGTTTCTTAATCTTAGTCATTCTCTGGAGTTGACTGAAACCCCAAACTTTGATTACATGCCTAATTTGGAAAAGATAGTACTAAAAGACTGTCCAAGTTTATCTTCCGTCTCTTATACCATTGGAGATCTCGATAAACTTCTTCTTATAAACTTGTCAAACTGCACAGGTCTTGGGACACTTCCGAGAAGCATCTATGGTTTAAAGTCTCTAGAAACCTTTATTCTTTCTGGATGTTCCTTGATCGACAAATTGGAGGAGGATTTGGAATGTATGAAATCCTTGACAACCTTAATTGTGGATAAGACTGCTATAACAAAAGTGTCCTTTTCAATAGTAAGATCTAAAAGCATTAAATATATTTCTTTACCTGGCTTTGAAGGATTTTCACGAGATGTATTTCCTTCTCTCATTCGATCTTGGATGTCACCATCAAATAATGTGATATCCCTGGTTCAAACATTTGCGCCCGTGTCATCTCTTGGTCTTTGTATGAAATGTGACTCAAAACCACAACTGTCTCAAGATGTAGCAAGAATTTTGGATGCATTGAAAGCCACAAATTGTCAGAAACTGGAACCAAGTGCAACTTCAACTCCTTCTCGTTTGATTAACGATTACATTGCTCAAGCTTCCACTTCAAAGTCTAATAATTTCTTGAAATCTTTCTTGATTCAAATGGGAATGAAACTCCAATCCACCAATATTGCCCAAGACAACATTTTACAGACTGCGGATGGAATTTGGGATCCAATTTTGCTCCCATGTTACAATATATCTGATTGGTCAACCATCAGTAGTAAAGGTTGTTCTATAATATTTGATGTCCCAACAATGAAGGGGAGTAACCTGAAGAATATGACGTTGTTCCTTGTCTATTACTCTTCCTCGGACAACATAGCATCAGAAGGTTGTCAAGGTGTGTTGATCATAAATTACACAAAGACAACCATTCAGGCATATACAAAAGATGCACTTACCTCCTTTGAGGATGAAGATTGGAAGAGCATAACATCAAATCTAGAATCTGGTAACAAAGTAGAAGTTGTGGTTGTTTTGGGGGATGGATTCATTGTTGAGAAGACTACAGTATATCTCTTATATGATGAACCAATCGACAAAGAAATGGAACACTGCAATGCAATAGGCAAGGAGAGTGTTATTGCTTTTAGTCATGAGGATAAGAATGTTGGTGTTTCTGATGGTGATAATATTCATGTCCCGATGGACCACATTATTACTGGTTCAGAGCAAGATGAAGCTTTAAGTGATGATAAGCATGGGCAGGCAATGAGTAGAAAAAGAAAGTCAGATTATTCTAATGGGATACACTACAATGCCTAA 4491 0.3825 MSTTDTTANPKGKKSYDLYLSFCGVHDDVPFVLKFREALSSYVPEALIFFDFVKLRHIGRVTVTAPSELSLNVIQDCKMVIIILSRNYTNSQSCLQELEFITQCCLTTPALIVLPVLYPIEPSLQIGIFGRPFHNFLDRVSIKEIFQGEDKIMTLVEAMSKSTQYPTDFAPTDGDEYDCVKSVVDRVISVIYKKRPELSRTFYTPSVKSSVQDVIQLLKQSKSPLVIGIWGIAGIGKTTIAKTIYDLIGPYFEGKCMLLNVGGVWGRNNGPVSLQEELLFHVNKATGFEKVTLKRNLRNKRVLVILEDVNKLEQLNALCGSRNWFGAGSKIIITTRDRRLLKEYGVDHIYRVKELDESESLDVFKWGAFGKETSPENFDELSRQVVAYSGGWPLALIALGRLLHGKEALQWEGVLWSLKNFSIPAPRLLNILEKSFNELSDNEKQTFLDIASFFIGKNQNDVLQTLNRSTQRAAFQISLLEDKSLVAIDENNKLEMHILLQAMARDIIKRESSSRTNQAKMYDVFLSFRGEDSRAKFMSHLYSSLQNAELERIMEISRARGLDVVPVFYEVDPAEVRHQEGQFGKAFEELRSTTSVNESTKTNWRRDLFDIGSKAGNESGDVKNIVESVSRLLDRTELFVAEHQVGVESRVEAATKLLDIQKSEDVLVLGIWGMGGMGKTTIAKAIYNQIGSKFEGKSFLLNIREIWETNNQVSLQQQVLGDIYKTMTFKIRDIESGKIILKERLSQNRILFVLDDVNEVDQLNALCGSREWFGPGSRIIITTRDLHILNSCRVDQVHRIEEMDGNESLELFCWHAFKQSRPTKDFARHSTDVIAYSGGLPLALQVLGSYLSDCEIPVWQKVLEKLKCIPHNQVHKKLKVSFDGLKDITEKQAFLDIACFFIGMDRNDVTQILNGCGFFADIGIKVLIERSLVTVDNRNKLQMHDLLRDMGRQIIYEESPFDLEKRSRLWRPEEVFDILSKYTGTKAVKGLALEFPKTNKVCLDTKAFKKMNKLRLLQLARKGSLVAMELKYSNLKYSWNWSQKMLENLKFLNLSHSLELTETPNFDYMPNLEKIVLKDCPSLSSVSYTIGDLDKLLLINLSNCTGLGTLPRSIYGLKSLETFILSGCSLIDKLEEDLECMKSLTTLIVDKTAITKVSFSIVRSKSIKYISLPGFEGFSRDVFPSLIRSWMSPSNNVISLVQTFAPVSSLGLCMKCDSKPQLSQDVARILDALKATNCQKLEPSATSTPSRLINDYIAQASTSKSNNFLKSFLIQMGMKLQSTNIAQDNILQTADGIWDPILLPCYNISDWSTISSKGCSIIFDVPTMKGSNLKNMTLFLVYYSSSDNIASEGCQGVLIINYTKTTIQAYTKDALTSFEDEDWKSITSNLESGNKVEVVVVLGDGFIVEKTTVYLLYDEPIDKEMEHCNAIGKESVIAFSHEDKNVGVSDGDNIHVPMDHIITGSEQDEALSDDKHGQAMSRKRKSDYSNGIHYNA 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05204 1496 SMART till_3 521 614 IPR000157 GO:0007165
Vifa2g05204 1496 SMART till_3 15 162 IPR000157 GO:0007165
Vifa2g05204 1496 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 143 IPR035897 -
Vifa2g05204 1496 SUPERFAMILY L domain-like 942 1187 - -
Vifa2g05204 1496 Gene3D - 488 549 IPR035897 -
Vifa2g05204 1496 MobiDBLite consensus disorder prediction 1464 1496 - -
Vifa2g05204 1496 PRINTS Disease resistance protein signature 1091 1107 - -
Vifa2g05204 1496 PRINTS Disease resistance protein signature 668 683 - -
Vifa2g05204 1496 PRINTS Disease resistance protein signature 744 758 - -
Vifa2g05204 1496 PRINTS Disease resistance protein signature 837 851 - -
Vifa2g05204 1496 SUPERFAMILY "Winged helix" DNA-binding domain 428 512 IPR036390 -
Vifa2g05204 1496 Gene3D - 550 632 IPR035897 -
Vifa2g05204 1496 Pfam TIR domain 16 137 IPR000157 GO:0007165
Vifa2g05204 1496 Pfam TIR domain 549 630 IPR000157 GO:0007165
Vifa2g05204 1496 ProSiteProfiles TIR domain profile. 14 167 IPR000157 GO:0007165
Vifa2g05204 1496 MobiDBLite consensus disorder prediction 1466 1489 - -
Vifa2g05204 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 897 IPR027417 -
Vifa2g05204 1496 Gene3D Ribonuclease Inhibitor 978 1213 IPR032675 -
Vifa2g05204 1496 Pfam NB-ARC domain 209 422 IPR002182 GO:0043531
Vifa2g05204 1496 Pfam NB-ARC domain 648 872 IPR002182 GO:0043531
Vifa2g05204 1496 Gene3D - 193 348 IPR027417 -
Vifa2g05204 1496 Gene3D - 633 799 IPR027417 -
Vifa2g05204 1496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 450 IPR027417 -
Vifa2g05204 1496 Gene3D - 803 886 IPR042197 -
Vifa2g05204 1496 Gene3D - 354 440 IPR042197 -
Vifa2g05204 1496 Gene3D - 11 192 IPR035897 -
Vifa2g05204 1496 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 522 1257 IPR044974 GO:0006952
Vifa2g05204 1496 SMART AAA_5 223 355 IPR003593 GO:0016887
Vifa2g05204 1496 SMART AAA_5 665 804 IPR003593 GO:0016887
Vifa2g05204 1496 SUPERFAMILY Toll/Interleukin receptor TIR domain 512 609 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05204 Vifa-Chr2 1549852797 1549864171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05204 221 523 WRKY Transcription Factor Family AT5G45050 35.599 3.87e-44 174