Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05191 ATGATTGCAAAGATGAAGATGATGATGATTCCTAGTTGTAGTAGTTTAAAGATTCTAGTTACTCTTGGTGTGCTTTTCAGTATGCAGATGTTAACTCACATGGAAGCTTCTTCTAGCTCAAGGGTTGAACACCTTCCTGGTTTTCAAGGGCCACTTCCTTTTCATCTTGAAACCGGGTATGTGGGGTTAGGAGAAACAGATGATGACTTGCAAGTGTTCTACTATTTTATCAAGTCAGAGAATAATCCTCAGAAAGACCCTCTTCTGCTTTGGTTAACTGGTGGCCCTGGTTGTTCTTCTTTTTCTGGTCTTGTCTATCAAATAGGTCCGTTTGCGTTTGAGAAAAAGGAGTACGACGGAAGCGTGCCTAGTTTGGTTTCGAGGCCACAATCTTGGACTAAGCTATGCAGCATTATTTTTGTTGATTTGCCCTTTGGAACTGGTTTCTCATATGCTAAAAATGTCACTGCTCATCGAAGCGACTGGAAACTTGTTCATCATGTTCATCAATTTCTTAGGAAGTGGCTGATCGATCACTCCGAATTTCTTTCAAATGAATTCTACATGGCAGCCGATTCATACTCTGGCATTCCTGTCCCAGCCATTGTCCAAGAAATTTCAAATGGAAATGAAAAAGGTGTCCAACCGTTGATAAATCTTCAGGGATATCTACTGGGAAATCCCTTAACAACATTCAAAGAAATCAATTATCACATTCCACATGCTCATGGAATGGGACTAATTTCCGATGAACTCTATGCGTCGCTGCAGAAAAATTGTAAAGGAGAATATATTGATGTAGATTCTAAAAATGAGTTATGTTTAAAAGATCTTCAATCCTTTGATGAGTGTCTTTTGGGAATTAATACATTCTACATTTTGGATCGCTATTGCAAAGACGACTCACATCTATGGAGGAGATCTTTGACTCAACAGTTGAAGAAACCTCTTAGCTCTCATCTCAAAGTGCCGGAATTAAATTGCCAAATTTATAGTTTTTACCTCGCAACTAAATGGGCTAATGATGATAGTGTTCGAAAGGCACTTCATATTCGAGAGGGAACCATAGGGAAATGGGAACGCTGTTACACTACAGATTTTGAGGAAGATATCCATGGTAGCTTCGAGTTTCATGTAAATATAAGTAAAAAAGGATACCGCTCTTTGATATACAGTGGGGATCATGATTTAGAGGTTCCTTTTACTTCTACTCAAGCTTGGATAAGGAACTTAAACTACTCCATTGTAGATGATTGGAGGCCATGGTTAGTTAATGATCAAGTTGGAGGATACACAAGGACTTACTCAAATCGAATGACATTTGCAACTGTAAAGGGTTCGGGTCATACGGCTCCAGAGTACACTCCCGAGCAATGTTTTGTCATGTTTAGTAGATGGATATCTAATTTGCCTTTGTAA 1419 0.3904 MIAKMKMMMIPSCSSLKILVTLGVLFSMQMLTHMEASSSSRVEHLPGFQGPLPFHLETGYVGLGETDDDLQVFYYFIKSENNPQKDPLLLWLTGGPGCSSFSGLVYQIGPFAFEKKEYDGSVPSLVSRPQSWTKLCSIIFVDLPFGTGFSYAKNVTAHRSDWKLVHHVHQFLRKWLIDHSEFLSNEFYMAADSYSGIPVPAIVQEISNGNEKGVQPLINLQGYLLGNPLTTFKEINYHIPHAHGMGLISDELYASLQKNCKGEYIDVDSKNELCLKDLQSFDECLLGINTFYILDRYCKDDSHLWRRSLTQQLKKPLSSHLKVPELNCQIYSFYLATKWANDDSVRKALHIREGTIGKWERCYTTDFEEDIHGSFEFHVNISKKGYRSLIYSGDHDLEVPFTSTQAWIRNLNYSIVDDWRPWLVNDQVGGYTRTYSNRMTFATVKGSGHTAPEYTPEQCFVMFSRWISNLPL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05191 472 FunFam Carboxypeptidase 327 471 - -
Vifa2g05191 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Vifa2g05191 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Vifa2g05191 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Vifa2g05191 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Vifa2g05191 472 SUPERFAMILY alpha/beta-Hydrolases 42 471 IPR029058 -
Vifa2g05191 472 Gene3D alpha/beta hydrolase 34 309 IPR029058 -
Vifa2g05191 472 FunFam Carboxypeptidase 375 469 - -
Vifa2g05191 472 FunFam Serine carboxypeptidase-like 11 36 472 - -
Vifa2g05191 472 Gene3D - 328 471 - -
Vifa2g05191 472 Pfam Serine carboxypeptidase 46 469 IPR001563 GO:0004185|GO:0006508
Vifa2g05191 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 456 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05191 Vifa-Chr2 1545571201 1545575096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05191 36 65 Calmodulin-binding Proteins AT2G22960 63.333 3.49e-06 45.8