Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05190 ATGAAGATGATGATGATTCCTAGTTCTAGTAGTTTTAAGATTCTAGTTACTCTTGGTGTGCTTTTCAGTATGCAGATGTTAACTCACATGGAAGCTTCTTCTAGCTCAAAGGTTGAACACCTTCCTGGTTTTCCAGGGCCACTTCCTTTTCAACTTGAAACCGGGTATGTGGGGTTAGGAGAAACAGATGATGATGACGACATGCAAGTGTTCTATTATTTTATCAAATCAGAAAATAATCCTCAAAAAGATCCTCTTATGCTTTGGTTGAGTGGTGGCCCTGGTTGTTCTTCTATTTCTGGCCTTATCATTGAAATAGGTCCAATTAAATTTGAAATAAAGGAGTACAACGAGAGCTTGCCTAATTTGATCTTGAGGCCAGAATCATGGACAAAGCTATGTAGTATTATTTTTGTAGATTTGCCATTTGGAACTGGTTTCTCCTATGCAAAAAATACCAGTGCTCAAAGAAGTGACTGGAAGATTGTTCACCATACTCATCAATTTCTTCGAAAGTGGTTGATTAATCATCCAGAATTTCTTTCAAATGAATTCTATATGGGAGGAGATTCATATTCTGGAATTCCTGTCCCTGCCATTGTTCAAGAAATTATAAATGGAAATGAAAAAGGTCTCCTACCCTTGATAAATCTCCAGAGATATCTTTTAGGAAATCCAGTGACAGGATACAAAGAATTTAATTATCGAGTTCCATATGCTCATGGAATGGCACTCATTTCTGATGAACTATATGCGTCACTTAAGAGAAATTGCAAAGAAAACTACATAGATGTAGATTCCAGAAATGTACTGTGTTTAAGAGATATCCAGTCCTTTAAAGAGTGTATTTCAGGAATTAATTATGAATATATTTTGGGTCCTTCTTGTCAAGATGGTATGAATATGTGGAGAAGATCTTTAACTCAGGAGTTTAAGGAATCTATTAGTTCTCAATCTCATCTCAAAGTTCCTGAAGTTAACTGCCAATGCGCAAGATGTCCTGGATCTGGTTACAGATGGTTATGTACCAACTGCAGCAGATGCAACTGA 1050 0.3657 MKMMMIPSSSSFKILVTLGVLFSMQMLTHMEASSSSKVEHLPGFPGPLPFQLETGYVGLGETDDDDDMQVFYYFIKSENNPQKDPLMLWLSGGPGCSSISGLIIEIGPIKFEIKEYNESLPNLILRPESWTKLCSIIFVDLPFGTGFSYAKNTSAQRSDWKIVHHTHQFLRKWLINHPEFLSNEFYMGGDSYSGIPVPAIVQEIINGNEKGLLPLINLQRYLLGNPVTGYKEFNYRVPYAHGMALISDELYASLKRNCKENYIDVDSRNVLCLRDIQSFKECISGINYEYILGPSCQDGMNMWRRSLTQEFKESISSQSHLKVPEVNCQCARCPGSGYRWLCTNCSRCN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05190 349 Gene3D alpha/beta hydrolase 31 340 IPR029058 -
Vifa2g05190 349 FunFam Serine carboxypeptidase-like 19 31 301 - -
Vifa2g05190 349 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Vifa2g05190 349 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 138 IPR001563 GO:0004185|GO:0006508
Vifa2g05190 349 PRINTS Carboxypeptidase C serine protease (S10) family signature 139 149 IPR001563 GO:0004185|GO:0006508
Vifa2g05190 349 SUPERFAMILY alpha/beta-Hydrolases 38 327 IPR029058 -
Vifa2g05190 349 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 328 IPR001563 GO:0004185|GO:0006508
Vifa2g05190 349 Pfam Serine carboxypeptidase 42 309 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05190 Vifa-Chr2 1545496516 1545518618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05190 31 67 Calmodulin-binding Proteins AT2G22960 54.054 1.55e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05190 K16296 - tpra:123922058 486.108