Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05188 ATGATGTTGAATCGTGGGTCAAATGTTTCGGCTGAAGTGAGTGGTTGTTCAGATGAAGAACTATGGAAGACAATTGCAGGACAATTGGTGGATGTTCCTTGTGTTGGTCAAAGGGTTTTCTATTTTCTTCAAGGTCACATGGAACAATTAGAGGCTTCGACGAATCAGGAACTGAATCAGAGGAGTCCTTTGTTGAAACTTCCTACGAAGATTCTTTGTCGCATCGTGAATATCCATTTACTGGCTGAACAAGAAACCGATGAAGTTTATGCGCAGATAACTTTGGTGCCGGAATCTAATCAAGACGAGCCTACAGTCCCTGATCCGTGTACCGATGAACCTCTGAGGCCGAAAATTCACTCGTTCTGCAAGATCTTAACTGCTTCGGATACGAGCACCCATGGTGGCTTCTCCGTTCTAAGAAAACATGCAACAGAATGCCTTCCTCCTTTGGACATGTCTCAAACAACACCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCACATATTTAGAGGTCAGCCGCGCAGACACCTTCTCACAACTGGATGGAGTACGTTTGTGACTTCCAAAAGATTAGTCGCCGGAGATACGTTTGTTTTTTTGAGAGGGGAAAACGAGGAATTACGCGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGTATGCCATCGTCCGTGATTTCTAGCCAAAGCATGCACTTAGGAGTTCTCGCAACTGCCTCCCATGCCGTTGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCGAGGACGAGCCAGTTCATTGTAAGCGTGAACAAGTACTTGTCAGGTATCAATAATAAGTTTGCTGTTGGCATGCGGTTCAAGATGAGGTTTGAGAGCGATGATTCTGCTGAGTCCGACAAAAGATTCTCCGGTACCATAGTTGGAGTCGAAGATATCTCTCCCCATTGGGCAAACTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACCGGCATCTATTCCAAGACCTGATAGGGTTTCACCATGGGACATAGAACCGTTTGTGTCTTCGGCTTCGACAGTTCAGCCTACAGCTGCAAAGACTAAAAGGCCTCGACCAACCAATGAAACCCCTGAGGACACTACATCAGCCGCTTCTATTTTCTGGGATGCTAGGATGACACAGACTGATATGACACAACGTAGCGTTTTAGCCGAAAGCAAAAAAGGCGATAATAATACTAGTATGTGGCATCATAAACAAACCGATATGATGAATACTAAAAGCAATAACAACAACGCTTTATTGAGGAATCATACGGAAGGAAGTTGGTTATCGTCTCCCCGTTCTGCATGTCCTTCTCATTTGCTTCACGACACAATCGATGATAGCAAAACCGTCTCAGCTTGGCCTGTTTCACAGTCTCAATCGTCTATACTGAACATTGATCGTGTGCTTGATCAAGTTGATAAAGACAACAAAGTCGAGACAGCTACGGGTTGTCGACTGTTTGGAGTAGAACTTATTGATCATTCGAAAAACTCGGCTGCTGTAGGTAAAGCATCTTCACATGCAGTAAATGTAACCGGAGCAAACCCCGAAGTTAGTTCCAGCACCATGTCTAGCTCTGATACTGGCCGTAAGTCTGACATCTCAAAGGCTTTTACGGAGAGGAAACAAGAACTGCAACAAGTATCAACGAAGGAGACACAGAGCAAGCAAATTTGTAGTAGAAGTCGAACTAAGGGCGTTGCAGTTGGTCGAGCGGTAGATTTGGCAATGTTGAATGGGTACGATCAACTTATCGGCGAATTAGAAGAGTTGTTCGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATCGTCTTCACCGACGACGAAGGAGATATGATGCTTGTCGGAGACGATCCATGGCCTGAATTCTGTAACATGGTAAGAAGAATCTTCATTTGTTCAAGCCAAGATGTGAAGAAGATGAAATCAGGAAGCAAATTACCGATCTCTTCAATCGAAGAAGGGACCGTAATAAGCTCAGACACAACCGAACGATGA 2052 0.4444 MMLNRGSNVSAEVSGCSDEELWKTIAGQLVDVPCVGQRVFYFLQGHMEQLEASTNQELNQRSPLLKLPTKILCRIVNIHLLAEQETDEVYAQITLVPESNQDEPTVPDPCTDEPLRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQTTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENEELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLSGINNKFAVGMRFKMRFESDDSAESDKRFSGTIVGVEDISPHWANSKWRSLKVQWDEPASIPRPDRVSPWDIEPFVSSASTVQPTAAKTKRPRPTNETPEDTTSAASIFWDARMTQTDMTQRSVLAESKKGDNNTSMWHHKQTDMMNTKSNNNNALLRNHTEGSWLSSPRSACPSHLLHDTIDDSKTVSAWPVSQSQSSILNIDRVLDQVDKDNKVETATGCRLFGVELIDHSKNSAAVGKASSHAVNVTGANPEVSSSTMSSSDTGRKSDISKAFTERKQELQQVSTKETQSKQICSRSRTKGVAVGRAVDLAMLNGYDQLIGELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMKSGSKLPISSIEEGTVISSDTTER 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05188 683 Gene3D - 119 223 IPR015300 -
Vifa2g05188 683 MobiDBLite consensus disorder prediction 528 547 - -
Vifa2g05188 683 MobiDBLite consensus disorder prediction 528 549 - -
Vifa2g05188 683 MobiDBLite consensus disorder prediction 356 380 - -
Vifa2g05188 683 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa2g05188 683 FunFam Auxin response factor 283 356 - -
Vifa2g05188 683 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Vifa2g05188 683 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 660 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa2g05188 683 SUPERFAMILY DNA-binding pseudobarrel domain 113 251 IPR015300 -
Vifa2g05188 683 Gene3D - 283 358 - -
Vifa2g05188 683 ProSiteProfiles PB1 domain profile. 572 653 IPR000270 GO:0005515
Vifa2g05188 683 FunFam Auxin response factor 120 224 - -
Vifa2g05188 683 Gene3D - 568 660 - -
Vifa2g05188 683 SUPERFAMILY CAD & PB1 domains 571 648 - -
Vifa2g05188 683 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Vifa2g05188 683 SMART B3_2 122 224 IPR003340 GO:0003677
Vifa2g05188 683 Pfam AUX/IAA family 615 656 IPR033389 -
Vifa2g05188 683 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05188 Vifa-Chr2 1543946536 1543950351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05188 2 665 B3 DNA Binding Superfamily AT4G23980 56.632 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa2g05188 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05188 K14486 - gmx:100779003 1066.6