Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05187 ATGATGTTGAATCGTGGGTCAAATGTTTCGGCTGAAGTGAGTGGTTGTTCAGATGAAGAACTATGGAAGACAATTGCAGGACAATTGGTGGATGTTCCTTGTGTTGGTCAAAGGGTTTTCTATTTTCTTCAAGGTCACATGGAACAATTAGAGGCTTCGACGAATCAGGAACTGAATCAGAGGAGTCCTTTGTTGAAACTTCCTACGAAGATTCTTTGTCGCATCGTGAATATCCATTTACTGGCTGAACAAGAAACCGATGAAGTTTATGCGCAGATAACTTTGGTGCCGGAATCTAATCAAGACGAGCCTACAGTCCCTGATCCGTGTACCGATGAACCTCTGAGGCCGAAAATTCACTCGTTCTGCAAGATCTTAACTGCTTCGGATACGAGCACCCATGGTGGCTTCTCCGTTCTAAGAAAACATGCAACAGAATGCCTTCCTCCTTTGGACATGTCTCAAACAACACCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCACATATTTAGAGGTCAGCCGCGCAGACACCTTCTCACAACTGGATGGAGTACGTTTGTGACTTCCAAAAGATTAGTCGCCGGAGATACGTTTGTTTTTTTGAGAGGGGAAAACGAGGAATTACGCGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAGTATGCCATCGTCCGTGATTTCTAGCCAAAGCATGCACTTAGGAGTTCTCGCAACTGCCTCCCATGCCGTTGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCGAGGACGAGCCAGTTCATTGTAAGCGTGAACAAGTACTTGTCAGGTATCAATAATAAGTTTGCTGTTGGCATGCGGTTCAAGATGAGGTTTGAGAGCGATGATTCTGCTGAGTCCGACAAAAGATTCTCCGGTACCATAGTTGGAGTCGAAGATATCTCTCCCCATTGGGCAAACTCAAAATGGCGATCGCTCAAGGTTCAATGGGATGAACCGGCATCTATTCCAAGACCTGATAGGGTTTCACCATGGGACATAGAACCGTTTGTGTCTTCGGCTTCGACAGTTCAGCCTACAGCTGCAAAGACTAAAAGGCCTCGACCAACCAATGAAACCCCTGAGGACACTACATCAGCCGCTTCTATTTTCTGGGATGCTAGGATGACACAGACTGATATGACACAACGTAGCGTTTTAGCCGAAAGCAAAAAAGGCGATAATAATACTAGTATGTGGCATCATAAACAAACCGATATGATGAATACTAAAAGCAATAACAACAACGCTTTATTGAGGAATCATACGGAAGGAAGTTGGTTATCGTCTCCCCGTTCTGCATGTCCTTCTCATTTGCTTCACGACACAATCGATGATAGCAAAACCGTCTCAGCTTGGCCTGTTTCACAGTCTCAATCGTCTATACTGAACATTGATCGTGTGCTTGATCAAGTTGATAAAGACAACAAAGTCGAGACAGCTACGGGTTGTCGACTGTTTGGAGTAGAACTTATTGATCATTCGAAAAACTCGGCTGCTGTAGGTAAAGCATCTTCACATGCAGTAAATGTAACCGGAGCAAACCCCGAAGTTAGTTCCAGCACCATGTCTAGCTCTGATACTGGCCGTAAGTCTGACATCTCAAAGGCTTTTACGGAGAGGAAACAAGAACTGCAACAAGTATCAACGAAGGAGACACAGAGCAAGCAAATTTGTAGTAGAAGTCGAACTAAGGTTCAAATGCAGGGCGTTGCAGTTGGTCGAGCGGTAGATTTGGCAATGTTGAATGGGTACGATCAACTTATCGGCGAATTAGAAGAGTTGTTCGACATAAAGGGACAGCTTCAACACAGGAACAAGTGGGAAATCGTCTTCACCGACGACGAAGGAGATATGATGCTTGTCGGAGACGATCCATGGCCTGAATTCTGTAACATGGTAAGAAGAATCTTCATTTGTTCAAGCCAAGATGTGAAGAAGATGAAATCAGGAAGCAAATTACCGATCTCTTCAATCGAAGAAGGGACCGTAATAAGCTCAGACACAACCGAACGATGA 2064 0.4443 MMLNRGSNVSAEVSGCSDEELWKTIAGQLVDVPCVGQRVFYFLQGHMEQLEASTNQELNQRSPLLKLPTKILCRIVNIHLLAEQETDEVYAQITLVPESNQDEPTVPDPCTDEPLRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQTTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENEELRVGVRRLARQSSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLSGINNKFAVGMRFKMRFESDDSAESDKRFSGTIVGVEDISPHWANSKWRSLKVQWDEPASIPRPDRVSPWDIEPFVSSASTVQPTAAKTKRPRPTNETPEDTTSAASIFWDARMTQTDMTQRSVLAESKKGDNNTSMWHHKQTDMMNTKSNNNNALLRNHTEGSWLSSPRSACPSHLLHDTIDDSKTVSAWPVSQSQSSILNIDRVLDQVDKDNKVETATGCRLFGVELIDHSKNSAAVGKASSHAVNVTGANPEVSSSTMSSSDTGRKSDISKAFTERKQELQQVSTKETQSKQICSRSRTKVQMQGVAVGRAVDLAMLNGYDQLIGELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMKSGSKLPISSIEEGTVISSDTTER 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05187 687 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Vifa2g05187 687 FunFam Auxin response factor 571 664 - -
Vifa2g05187 687 Pfam AUX/IAA family 555 612 IPR033389 -
Vifa2g05187 687 Pfam AUX/IAA family 619 660 IPR033389 -
Vifa2g05187 687 MobiDBLite consensus disorder prediction 528 547 - -
Vifa2g05187 687 MobiDBLite consensus disorder prediction 528 549 - -
Vifa2g05187 687 MobiDBLite consensus disorder prediction 356 380 - -
Vifa2g05187 687 ProSiteProfiles PB1 domain profile. 576 657 IPR000270 GO:0005515
Vifa2g05187 687 SUPERFAMILY DNA-binding pseudobarrel domain 113 251 IPR015300 -
Vifa2g05187 687 Gene3D - 572 664 - -
Vifa2g05187 687 Gene3D - 283 358 - -
Vifa2g05187 687 FunFam Auxin response factor 120 224 - -
Vifa2g05187 687 Gene3D - 119 223 IPR015300 -
Vifa2g05187 687 SUPERFAMILY CAD & PB1 domains 577 652 - -
Vifa2g05187 687 FunFam Auxin response factor 283 356 - -
Vifa2g05187 687 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 664 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa2g05187 687 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Vifa2g05187 687 SMART B3_2 122 224 IPR003340 GO:0003677
Vifa2g05187 687 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa2g05187 687 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05187 Vifa-Chr2 1543946536 1543950351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05187 2 669 B3 DNA Binding Superfamily AT4G23980 57.228 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa2g05187 AUX_IAA 1.6e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05187 K14486 - gmx:100779003 1079.7