Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05182 ATGGCATTATTCTCAACTAATCTCAAGCTGCTTGTCATTCATCATGACACCATTCTTCTTGATCAAATTCAACAAATGTGTGATCGCTGTAATTATCTACTAACCAAATGCACTTCACCTTTTTATGCTCTTCATCTTCTTGCCGAAAGAAATCTTTATTTTGATATGATGCTGATTGATGTTTGTATGCCAAACATGGATTCATATGAGTTTCTTCGATATGTAACCCTACAACACAACATCCCAGTCATTGTCATGTCTTCTGATGTAACAAATACTTCTGTCATGAAGTCTATAATTCATGGTGCTTGTGATTACTGGCTTCAACCTTTAGATGAAAAACAATTCAAAACTATGTGGCAGCATGTTGTCAGAAAAAGTCCGACTGAAAATAAAGAACGTGTTGTTCTTGGATTCTTGAAGGCTCAAAGCCCTAAAGAAGATGATGTTGTTGGAATCATGAAGGTTCAAAGCCCTAAAGAACATGAAGTTGTTGGATTCTTGGAGGCTCCTAAGCATGAAAGAAAACGGGAGAGAGAAGTCGGTAATCCTCCAAAAGAAAAAAGTGCAAAAAAGAGTCGGTTATCATGGACGCCGCAACTGCATCAACAGTTTGTAAATGCTGTTAACAAACTTGGCTTGGATGAGGCAAAACCTAGAAAGCTTGTCAAAATTATGGATGCTTCTGGTTTAACAATGGCTCAGGTTGCAAGTCATTTGCAGAAGTATAGAAACTATTTGAAGAGACCATCTTGTGGAAAAAAGTCAAAGAAAAGTACAAGAATTGACACTCCAACTGAGTGTATTAATAAAACATCATTAGAATCTGAACATGCTCAGTCCCAAAGTTCTCAACTGAACTCAACCCTTCAAAGAGATAATAATTCTGAAACACAACAACATTCAACTGATGTTACTAATTATCAAGTCTCTGACACTTGCTACAATTATGAAACACAACAGCATTCAGCAGACCTTGGGGATTATCAAGTCTCCGACATTATGAGCAACGATTTTCCTGATCCATCATCTGACTTGTTCATAGATTATGATGAGTTAATATCGTTATTATTATGA 1077 0.3649 MALFSTNLKLLVIHHDTILLDQIQQMCDRCNYLLTKCTSPFYALHLLAERNLYFDMMLIDVCMPNMDSYEFLRYVTLQHNIPVIVMSSDVTNTSVMKSIIHGACDYWLQPLDEKQFKTMWQHVVRKSPTENKERVVLGFLKAQSPKEDDVVGIMKVQSPKEHEVVGFLEAPKHERKREREVGNPPKEKSAKKSRLSWTPQLHQQFVNAVNKLGLDEAKPRKLVKIMDASGLTMAQVASHLQKYRNYLKRPSCGKKSKKSTRIDTPTECINKTSLESEHAQSQSSQLNSTLQRDNNSETQQHSTDVTNYQVSDTCYNYETQQHSADLGDYQVSDIMSNDFPDPSSDLFIDYDELISLLL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05182 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 189 248 IPR017930 -
Vifa2g05182 358 Pfam Response regulator receiver domain 11 118 IPR001789 GO:0000160
Vifa2g05182 358 Gene3D - 189 249 - -
Vifa2g05182 358 ProSiteProfiles Response regulatory domain profile. 9 124 IPR001789 GO:0000160
Vifa2g05182 358 SMART REC_2 8 120 IPR001789 GO:0000160
Vifa2g05182 358 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 285 IPR045279 GO:0009736
Vifa2g05182 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Vifa2g05182 358 SUPERFAMILY CheY-like 7 140 IPR011006 -
Vifa2g05182 358 MobiDBLite consensus disorder prediction 169 196 - -
Vifa2g05182 358 FunFam Two-component response regulator 188 251 - -
Vifa2g05182 358 SUPERFAMILY Homeodomain-like 190 249 IPR009057 -
Vifa2g05182 358 MobiDBLite consensus disorder prediction 169 193 - -
Vifa2g05182 358 CDD REC_typeB_ARR-like 11 124 - -
Vifa2g05182 358 MobiDBLite consensus disorder prediction 273 305 - -
Vifa2g05182 358 Gene3D - 4 132 - -
Vifa2g05182 358 Pfam Myb-like DNA-binding domain 195 244 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05182 Vifa-Chr2 1541673698 1541674970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05182 4 249 Response Regulator Gene Family AT2G25180 34.252 1.52e-39 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa2g05182 Response_reg 4.7e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05182 - K14491 psat:127104423 432.565