Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05174 ATGGGAAGACAGAAGCATTCTGATTCTTATCCTGAGTATAGTAACAGCCTCTATCATATTATTAAGCACCATCCCTTATGTCACCATTTCATACAAAAAAGACAGACATACAACAACTGTGACGACGGCGAAACAAGTGTTACAGGAACTGTACTTGCACAAAGGGATGAAGCTTTCTCATGTGACAAAAGGAAGAACCTAAGTCTTGCAAAGTTAAGCAACTTATATGTTGAAGAAAAGGTGACACCACATTCTTCATATGGAAAAGGATGTTCACAATGTGATGCTACATCTAGCAGCGATTACTCGGAATGTAACTTATGCTGCAAGCATCATCAACATACGAAAAATGACTTACTTGTGCCACAAGTAAATGATAAAAAGAAGCATAAAGTGGAAAGTTATGCAAGGAAGCATTTATTTGGAGTTTCCACTCGCCTATGCAAGCATTTTGGCGACGGTTTTGAAACAACCAACATGAACAAGAAAATATTATTAACATTTCGTCACGATCCCGTCTTTCCTTTGGTCTATCACTTCCATAAACAACAGCATTTGCAAAGAGCAAAAATGACACTAAATAGGTCTGAATCATTTCCTTTTCCTTATTCATTATCTAAAACAAAAGGGATCGGAAGATTATACAGCGAAAACAAAACAAGAAAGCCGGTTCAATTCGTGTCATCAAGAACAACATGTGAACAGGTCATGCCATCGGTAGCAAAAGCGAAAGTAAATGGAAATTTCAATATGAATGATGCAGTTATAATAGTAAGAGATGTTAAGTTTTCTTCGGTTTCTGCAAAGGGTCAAAATAGTCTCAAACAAAAAATTGAGCATGTAACTGGCGAGAGCGGTAAAGAAAAGATTCGTGTTGCAATGGATTCAGTCATTCATAAACTTCCTCAAGGCCAAAGGATATCAGATGAATTGAAGAATGAAATTTTGAAGAAATTGACAGATCCTATTACTAAAAGAGAAGTTCAACACAAAAGTTTCATAAGAAGGACAGTAAGCTCCATAAGAAGGACCGTGTCTCTTCAAGAACCGCTCGAAAGTTATTGTAAAACGCTAGAGAACAGCTTCAAAACAGTTGCAAGAACCTCTCATTCAGAGAAACTAAAACTAGAAAAACAAAAGGCACATTCGCCGTTAAGAATGTTGATACCTCTTCAAAGAATACTTTCTTTACCTGATCTTCAATCTTTTTCATATGCTTCTCAGAAGGGAGATTTTTCTGATTTTACTCCGGAAAATCATGTCATTATAGATAAAAATGATTTGCTGATTAGTAATATTGTGAAATCATCAGGTTCAATATCTAAGTTGGATTATGCCGATAAACCGAACAATGTGGTTCAAAAACTTGAGATTCCAACCAAGAAGTTGAACGTTGATATTCCTCAAATTCATGTGGACGCCAAACTCAAAGAAGAGTTTAACTATGTGAAATATGTTCTTGAAATATCTGGATTCACAAGTAATGAAAGCATTTCAGCATGGCATTCTAAAGACACTCCACTTGATCCATTACTATATGAAGAAATGGAAAATGATCCTGAATTTTGTGGTAAAATAAGTGGTGAATGTAATCATCATGTATTGTTTGATTTGATTAATGAGACCATGTTGGAAATTTATGGTAAGTCATATGGTTACCCTTCTATTGTAGGGTGTCACATTCTTCATAAAGTATGGACTCTTATGAGTAAGTCTTTGTGTTTGGGATATAAAGTTGGTCAAAAGATAGATGATCATGTAAGTAGGGATTTATCAAAAAATGATGGGTGGGTTAACATTCAATTTTATGATGAATGTTTTGGTTTGGAGGTGGATCACATGATTTTTCATGATCTACTTAAGGAAATAGTGTTGGATTTAGCTTGTTTATGA 1893 0.3508 MGRQKHSDSYPEYSNSLYHIIKHHPLCHHFIQKRQTYNNCDDGETSVTGTVLAQRDEAFSCDKRKNLSLAKLSNLYVEEKVTPHSSYGKGCSQCDATSSSDYSECNLCCKHHQHTKNDLLVPQVNDKKKHKVESYARKHLFGVSTRLCKHFGDGFETTNMNKKILLTFRHDPVFPLVYHFHKQQHLQRAKMTLNRSESFPFPYSLSKTKGIGRLYSENKTRKPVQFVSSRTTCEQVMPSVAKAKVNGNFNMNDAVIIVRDVKFSSVSAKGQNSLKQKIEHVTGESGKEKIRVAMDSVIHKLPQGQRISDELKNEILKKLTDPITKREVQHKSFIRRTVSSIRRTVSLQEPLESYCKTLENSFKTVARTSHSEKLKLEKQKAHSPLRMLIPLQRILSLPDLQSFSYASQKGDFSDFTPENHVIIDKNDLLISNIVKSSGSISKLDYADKPNNVVQKLEIPTKKLNVDIPQIHVDAKLKEEFNYVKYVLEISGFTSNESISAWHSKDTPLDPLLYEEMENDPEFCGKISGECNHHVLFDLINETMLEIYGKSYGYPSIVGCHILHKVWTLMSKSLCLGYKVGQKIDDHVSRDLSKNDGWVNIQFYDECFGLEVDHMIFHDLLKEIVLDLACL 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05174 630 Pfam Domain of unknown function (DUF4378) 479 622 IPR025486 -
Vifa2g05174 630 PANTHER PROTEIN TRM32 450 627 IPR044257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05174 Vifa-Chr2 1539492349 1539495267 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05174 143 616 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 31.738 7.35e-54 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05174 - - mtr:25491599 742.265