Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05173 ATGAGTAACACTGAAAAAATTGAAAATGTGAAGAAGTGGTTCATTCCTTCTAAACCTCTAGTTAGCATGTTGTTAGTGCAAGTTATTTCAACTGGAATGCAACTTTTGTCAAGGGTAATCTTAGTCAGGGGTACTTTCATTTTTGCACTCGTTACTTATCGATATATTGTTGCAGCTATTTGTGTTGTTCCCTTTGCACTTTATTTTGAAAGAGAACAAGCGAAGACATTCAATTTCAATTGGAAAGTTTGGATGTTCCTTTTCGTTAATGCATTAGTGGGGATGACAATGGCTATAGGATTATTCTATTATGGTCTTCGAGATACATCCGCTACTTACTCTGTCAACTTTCTCAACCTCATTCCGATTTTCACATTTTTAATATCTATTATAATAAGAACAGAAAATTTAAATATTAGGACATGGAGTGGTATAGCTAAATGCCTTGGAGCAATTTTATGTGTTGGTGGAGAATTATCTATAAGCCTTTACAAAGGAAAGGAATTTTATATTGGTCATCATAATCATCATGCTGAAACGATTGTTGTTGGAGCACATAAAAGTCACATGCTTCGTGGAACTTTCTTTTTGATTGCATCTTGTTGTTGTTCCACGACTTGGTTTATTATGCAAGTTCGGTTGGCTAAAGTATTTCCATTTAGGTATTGGACCACAATGATATCATGTTTTATGACGGCAATTCAGTCAGCAATAATTGGTGCAGGCATAAATTCCAGTAAAGATGCTTGGAAACTAGAATTAAATCTACAACTCATTACTATAGTCTATGCGGGAGTATTGGCTACTGCTGCAACATTTTGTTTACTATCATGGACGATAACAATAAAGGGACCAACTTATCCATCAATGTTCAATCCATTGGCTCTTGTTTTTGTTGCCATATCAGAGGCTTTTGTACTTGGTGAACCACTACAAGTTGGAATGTTATTAGGCATGATTTTAATCACACTGGGATTATATTCTTTTTTATGGGGTAAAAGGAATGAGATACCTCATTTTCATCAATCAAATGTAGGAATTTTGGAATTATCAACAAGCAGGAGAGATGATCCTACCGTGCCTAAGTATATTGTGGTTACAAAGTAA 1107 0.3487 MSNTEKIENVKKWFIPSKPLVSMLLVQVISTGMQLLSRVILVRGTFIFALVTYRYIVAAICVVPFALYFEREQAKTFNFNWKVWMFLFVNALVGMTMAIGLFYYGLRDTSATYSVNFLNLIPIFTFLISIIIRTENLNIRTWSGIAKCLGAILCVGGELSISLYKGKEFYIGHHNHHAETIVVGAHKSHMLRGTFFLIASCCCSTTWFIMQVRLAKVFPFRYWTTMISCFMTAIQSAIIGAGINSSKDAWKLELNLQLITIVYAGVLATAATFCLLSWTITIKGPTYPSMFNPLALVFVAISEAFVLGEPLQVGMLLGMILITLGLYSFLWGKRNEIPHFHQSNVGILELSTSRRDDPTVPKYIVVTK 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05173 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 334 - -
Vifa2g05173 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 155 - -
Vifa2g05173 368 PANTHER WAT1-RELATED PROTEIN 18 337 IPR030184 GO:0016020|GO:0022857
Vifa2g05173 368 Pfam EamA-like transporter family 195 329 IPR000620 GO:0016020
Vifa2g05173 368 Pfam EamA-like transporter family 21 155 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05173 Vifa-Chr2 1538595969 1538600944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05173 19 333 Nodulin-like Gene Family AT1G09380 34.891 1.42e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05173 - - gmx:100782551 451.44