Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05165 ATGGATGATAACGCATTGAAAGATGAACAGCTTGTTGTAAACGATCAACAAGAAATCTATGAATCCTTTGTTTGCTGCGTTTGCCTGGATCTTTTATACAAGCCCGTTGTGCTATCTTGTGGTCATGTATCATGTTTCTGGTGTGTCCATAAATCGATGAATAGATCGCGCGAATCCCATTGTCCAGTTTGTAGGAATCCATACCATCACTTTCCCACAATCTGTGAAATGCTTCACTTTTTGCTTCTTAAGACATATCCTGCAGCTTACAAGAGAAGGGAAAATCAGATACTTGAGGAAGAACAGGAAATGGATTTCTTCTCCCCTCAAATTATATGTGATTATCCGGGGAATTCGCCTACCTCTACTATCATAAATCAGGCATCTAACTCATCCAGCACAGAATCTTTTGAAATTATGGAGCAATCTATGGAGCAATCAGGGTCCGCCAATCATAAAGGAGATGAAGGAATCATTTCTGAATACTCGTCTGACAGAAAACCTCAAATTATAGGAACTTCTTCTGTTGAGGGAAAAAGATTGCCTCAAAATGAGCACAAACCAAAAATATTAGTTACAGATTTAATGTGTCCAATATGCAAACAACTGCTGGTTCATCCTGTTGTTCTTAATTGTGGTCATGTATATTGTGAGAATTGTATTACCGACTTATCTGTTGAGATGCTTAGATGTAAAGTTTGTCAAAGTCCACATCCTAGAGGGTTTCCCAAAGTTTGTTTGGCTCTTGACCAATTTTTAGAGAAGCAATTTCTAGAAGAGTACACCCAGAGAAGAGATGCAATTCAACTTGGCCAAATCAAAGTCCAACCTGAGACCACATCTTCTTGTTCATTGCCCAAGGACAGCGGAGAAAAGATAGCTTGGTGGTCTAATCCTGAACTGTTGGTTCATAGAGGAGTTGGTTGTGATTTTTGCGGGATGTACCCAATAATTGGGGACAGATTTAGATGTGTTGACTGTGAGGAGAGCATAGGCTTTGATCTTTGTGGTGACTGCTATAAGAACCGCTCAAAGCGTCCAGGACGATTTAACCAAAAGCACACTCCTGACCACAACCTCGAGCTTGTACAATATCGAAGGATGCTAATAAGCCGTGGACAAGATTCTTCAGATTTAATAGTTATACCAGATGATCCTGCTTCCTCCACCGATGAAGATGAAAACCAGACCGACTCTGACGCCACCAACTGA 1212 0.4059 MDDNALKDEQLVVNDQQEIYESFVCCVCLDLLYKPVVLSCGHVSCFWCVHKSMNRSRESHCPVCRNPYHHFPTICEMLHFLLLKTYPAAYKRRENQILEEEQEMDFFSPQIICDYPGNSPTSTIINQASNSSSTESFEIMEQSMEQSGSANHKGDEGIISEYSSDRKPQIIGTSSVEGKRLPQNEHKPKILVTDLMCPICKQLLVHPVVLNCGHVYCENCITDLSVEMLRCKVCQSPHPRGFPKVCLALDQFLEKQFLEEYTQRRDAIQLGQIKVQPETTSSCSLPKDSGEKIAWWSNPELLVHRGVGCDFCGMYPIIGDRFRCVDCEESIGFDLCGDCYKNRSKRPGRFNQKHTPDHNLELVQYRRMLISRGQDSSDLIVIPDDPASSTDEDENQTDSDATN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05165 403 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Vifa2g05165 403 PANTHER UNCHARACTERIZED 16 366 - -
Vifa2g05165 403 SMART zz_5 303 349 IPR000433 GO:0008270
Vifa2g05165 403 MobiDBLite consensus disorder prediction 387 403 - -
Vifa2g05165 403 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Vifa2g05165 403 SUPERFAMILY RING/U-box 190 257 - -
Vifa2g05165 403 ProSiteProfiles Zinc finger ZZ-type profile. 304 368 IPR000433 GO:0008270
Vifa2g05165 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 287 IPR013083 -
Vifa2g05165 403 MobiDBLite consensus disorder prediction 378 403 - -
Vifa2g05165 403 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Vifa2g05165 403 FunFam E3 ubiquitin-protein ligase PRT1 298 363 - -
Vifa2g05165 403 Pfam RING-type zinc-finger 197 222 IPR027370 -
Vifa2g05165 403 SUPERFAMILY RING/U-box 295 362 - -
Vifa2g05165 403 SUPERFAMILY RING/U-box 6 76 - -
Vifa2g05165 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
Vifa2g05165 403 SMART ring_2 25 64 IPR001841 -
Vifa2g05165 403 SMART ring_2 197 234 IPR001841 -
Vifa2g05165 403 Pfam Zinc finger, C3HC4 type (RING finger) 24 69 - -
Vifa2g05165 403 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Vifa2g05165 403 Pfam Zinc finger, ZZ type 304 345 IPR000433 GO:0008270
Vifa2g05165 403 Gene3D - 299 364 IPR043145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05165 Vifa-Chr2 1537090833 1537100110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05165 12 65 C3H Transcription Factor Family AT1G74990 36.364 2.79e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05165 - - tpra:123920334 634.795