Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05158 ATGCATGTGATGCTTGCATTACAGGTTGTTGACTATGTCATTGTTGCATTAAGTTCATCTATCCTTAAGTTAATCAATCAGGATTGGGGACGTCATGATTCAAAATATTTTGTATGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGACACATTCCTGGAATTCTTACTAATCAACTTCAAACTTCATTCAGCGAGCCGCGTCTTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAATTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGCGATGTGTTGACATTGGAATTCCTGCCAACAACAAAGAGATAGGTAATTTAAGAAAGGAATCCTAA 456 0.3969 MHVMLALQVVDYVIVALSSSILKLINQDWGRHDSKYFVWVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHIPGILTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRCVDIGIPANNKEIGNLRKES 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05158 151 PRINTS Ribosomal protein S2 signature 112 123 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05158 151 PRINTS Ribosomal protein S2 signature 133 147 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05158 151 PRINTS Ribosomal protein S2 signature 70 87 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05158 151 PRINTS Ribosomal protein S2 signature 95 112 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05158 151 Pfam Ribosomal protein S2 93 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05158 151 CDD RPS2 39 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05158 151 ProSitePatterns Ribosomal protein S2 signature 2. 95 119 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa2g05158 151 PANTHER 40S RIBOSOMAL PROTEIN SA 40 143 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa2g05158 151 SUPERFAMILY Ribosomal protein S2 38 145 IPR023591 -
Vifa2g05158 151 Gene3D - 18 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05158 Vifa-Chr2 1535073620 1535075309 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05158 40 142 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 92.233 1.14e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05158 K02998 - pda:103712591 201.445