Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05156 ATGCTTGCATTACAGGTTGTTGACTATGTCATTGTTGCATTAAGTTCATCTATCCTTAAGTTAATCAATCAGGATTGGGGACGTCATGATTCAAGATATTTTGTATGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGACACATTCCTGGAATTCTTACTAATCAGCTTCAAACTTCATTCAGCGAGCCGCGTCTTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAATTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACTGATTATCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGAGATAGGAATCTCGAATCTTCAATCTACAAAGGTATTGATCCGGCTTCTATGGCAGAACAAAGCTCATTCTCATGAGGAAACTCCTAGCCCGTCCACAGTTCAGCCCTGCATAGAAAGATTAAAAGGCAAAAATCAATAA 558 0.405 MLALQVVDYVIVALSSSILKLINQDWGRHDSRYFVWVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHIPGILTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDYPMRYVDIGIPANNKEIGISNLQSTKVLIRLLWQNKAHSHEETPSPSTVQPCIERLKGKNQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05156 185 PRINTS Ribosomal protein S2 signature 130 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05156 185 PRINTS Ribosomal protein S2 signature 109 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05156 185 PRINTS Ribosomal protein S2 signature 67 84 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05156 185 PRINTS Ribosomal protein S2 signature 92 109 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05156 185 Gene3D - 16 183 - -
Vifa2g05156 185 PANTHER 40S RIBOSOMAL PROTEIN SA 37 140 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa2g05156 185 Pfam Ribosomal protein S2 90 146 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05156 185 ProSitePatterns Ribosomal protein S2 signature 2. 92 116 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa2g05156 185 CDD RPS2 36 156 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05156 185 SUPERFAMILY Ribosomal protein S2 34 150 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05156 Vifa-Chr2 1535048615 1535050496 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05156 37 139 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 91.262 4.65e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05156 K02998 - pda:103712591 202.601