Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05153 ATGTTGTTTTCCATTCCATTGTTTGTTTTCTTTTCAAGCCTTTGCTTTTTAACCGAGCAAATGGAAAAGAAAGAGAATGAAACAACGAAAATCTCAAATCATCAAGCTGAGGAGGAGCCTATTTTGAACTTTCAAAGAAAAGAAATATTTAAAGAATGTCGAAGAAATCATGCTTCCAGCATTGGAGGCTTGGCTGTTGATGGTTGTTGCGAGTTTTTACCTGCTGGAGTTGAAGGTACTGATGAGTTTTTCAAATGTGCTGCATGTAATTGTCACCGAAATTTTCATCGTAAAGAATTTGTTGCGGGAGATCAACTTCAACGCCCGTCCAACACCCTATATTACCCTTCACCAAATCCTATCTCAACCGTTTTTCCAACTCCAAATGATAACATCCCTAAGAGTGGCTCGTCGAGGGAGACTACATCATCCCTCGACTTGCTTAATGGTGCTGTTCATGATACAGCACCAATAAATAGGGGTGGTACTAGTGGTGGGGGAGAAAGTCCGTCGAGCTCTAACAAAAGATTTAGAACAAAGTTCACTCGTGAACAAAAGGAGAAGATGTTGAATTTTGCTGAGAAATTAGGTTGGAAGATTCGCAAACAAGATGAGGATGATGTTGAGGAATTTTGTAATAAAATTGGGGTGAAGTTTCAAGTTTTTAGAGTGTGGATGCTTAACAATAAATATTCCATTCGAAAACAACCTTAG 714 0.388 MLFSIPLFVFFSSLCFLTEQMEKKENETTKISNHQAEEEPILNFQRKEIFKECRRNHASSIGGLAVDGCCEFLPAGVEGTDEFFKCAACNCHRNFHRKEFVAGDQLQRPSNTLYYPSPNPISTVFPTPNDNIPKSGSSRETTSSLDLLNGAVHDTAPINRGGTSGGGESPSSSNKRFRTKFTREQKEKMLNFAEKLGWKIRKQDEDDVEEFCNKIGVKFQVFRVWMLNNKYSIRKQP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05153 237 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Vifa2g05153 237 FunFam Zinc-finger homeodomain protein 2 164 235 - -
Vifa2g05153 237 NCBIfam homeobox domain, ZF-HD class 175 231 IPR006455 -
Vifa2g05153 237 MobiDBLite consensus disorder prediction 162 176 - -
Vifa2g05153 237 MobiDBLite consensus disorder prediction 152 178 - -
Vifa2g05153 237 Coils Coil 17 37 - -
Vifa2g05153 237 SUPERFAMILY Homeodomain-like 161 235 IPR009057 -
Vifa2g05153 237 Pfam ZF-HD protein dimerisation region 49 100 IPR006456 -
Vifa2g05153 237 Gene3D - 161 234 - -
Vifa2g05153 237 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 50 99 IPR006456 -
Vifa2g05153 237 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05153 Vifa-Chr2 1534455754 1534456467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05153 50 233 ZF-HD Transcription Factor Family AT4G24660 45.789 1.32e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa2g05153 ZF-HD_dimer 6.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05153 - - tpra:123892177 269.24