Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05146 ATGTTAGAACAAATTTTAACAGAAACTCGTTTCAAGAGAGATAAAAATCAGATCTTTGAAGAGACTAGTAGCTTTGGTGAAATGGGTTTGAAGATCCGTTCACTGAGAATCACCGGTTTCAGATCTTCATCGGAGCTTCTAGAATCAACGGGAAGAAGACTCGCCGATTTCGCGAGTTCGCTCGGACTTCCATTTGAGTTTCATCCGGTGGAAGGTGAAATCGGAAGCGTAACAGAACCGAGTCAACTCGGTGTTAGACCAAACGAAGCCATCGTGGTTCACTGGATGCACCATTGCTTGTACGATATAACCGAAAGCGATTTAGGGACGTCGAGATTGCTGACTCAGCTTAGGCCAAAGCTAATCACGACCGTTGAGCAGGATCTCAGCCACGTTGGTAGCTTCCTGGCGAGGTTTGTGGAGGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTGGGGGATGGTTTGGGTGCGGACAGTGTGGAGAGGCATATGGTGGAGCAGCAGCTGTTGGGTGAGTGCAGTAGTTAG 534 0.4831 MLEQILTETRFKRDKNQIFEETSSFGEMGLKIRSLRITGFRSSSELLESTGRRLADFASSLGLPFEFHPVEGEIGSVTEPSQLGVRPNEAIVVHWMHHCLYDITESDLGTSRLLTQLRPKLITTVEQDLSHVGSFLARFVEALHYYSALFDALGDGLGADSVERHMVEQQLLGECSS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05146 177 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 33 174 IPR005202 -
Vifa2g05146 177 Pfam GRAS domain family 33 174 IPR005202 -
Vifa2g05146 177 ProSiteProfiles GRAS family profile. 1 177 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05146 Vifa-Chr2 1534207977 1534208601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05146 31 173 GRAS Transcription Factor Family AT5G41920 68.966 1.04e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa2g05146 GRAS 1.7e-34 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05146 - - pvu:PHAVU_011G024600g 262.307