Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05112 ATGGTCATTCAAATTATTCAAAATCACTCAAGTTCAATCATTCGAGCGTCTTTCATTCACTCATATTATAGTATATGTCATTTCGAGATTACAAAACAGAGTTACAAAGGTCCAAATAAACTTTTACAAAAAAAAGAGAAAGGAAAAACATGGGAGAAACTTCAACTTGCTGCAAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGACACATTCCTGGAATTTTTACTAATCAGCTTCAAACTTCATTCAGCGAGCCGCGTCTTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAATTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGCGATATGTTAACATTGGAATTCCTGCCAACAACAAAGAGATAGGAATCTCGAATCTTCAATCTACAAAGGTATTGATCCGGCTTCTATGGCAGAACAAAGCTTATTCTCATGAGGAAACTCCTAGCCTGTCCACATACGTTCCTAGATTTCTTCGAATGGTACCATTAACTTCAGAACTTAAGAGAACAGCTGGTGTCTTTGTTGAAACTACATGGGCAGTGATAATGAGTGCAACAAAAGATGAAGCTCTGAGAGCCAAAGAAATTGCTGAGAATAGATTGCAGACTGGTGATTTTGAAGTGGCACTGAAGTTTGCTATGAAAGCTCGGCGACTGTTTCCTGATACCCAGAACATTACTCAGATCATTACTATTTATGAGGTTCACTATGCTTCTCAGAACAAACTCTCTACATCTGATATGAACTGGTATGGAATTCTTCTAACTAATAAATTTTCTAAAGAAGCAATGATAAAGAGAGAGTATAGAAAACTTGCACCGCTACTTCATCCTGATAAAAATAAATCTGCTGGAGCAGAGGCCGCTTTCAAGTTGATTGTGGAAGCTAACAGAATATTGAGTGACCCAGCAAAGTGTTCTTTATATCACATGAAGATTAGCCGCCTTGCTGGAATTAAAGCACCTCAGGCTCCATCCTATCACCATAATCTTCACACTTCTTCAACACAAATCCCGCTGGCCACTTGGAACTCAACCTGTAAAATCGCATAA 1182 0.3909 MVIQIIQNHSSSIIRASFIHSYYSICHFEITKQSYKGPNKLLQKKEKGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHIPGIFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVNIGIPANNKEIGISNLQSTKVLIRLLWQNKAYSHEETPSLSTYVPRFLRMVPLTSELKRTAGVFVETTWAVIMSATKDEALRAKEIAENRLQTGDFEVALKFAMKARRLFPDTQNITQIITIYEVHYASQNKLSTSDMNWYGILLTNKFSKEAMIKREYRKLAPLLHPDKNKSAGAEAAFKLIVEANRILSDPAKCSLYHMKISRLAGIKAPQAPSYHHNLHTSSTQIPLATWNSTCKIA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05112 393 SUPERFAMILY Ribosomal protein S2 48 174 IPR023591 -
Vifa2g05112 393 PANTHER 40S RIBOSOMAL PROTEIN SA 45 163 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa2g05112 393 Gene3D - 18 196 - -
Vifa2g05112 393 SUPERFAMILY Chaperone J-domain 282 354 IPR036869 -
Vifa2g05112 393 Gene3D DnaJ domain 277 368 IPR036869 -
Vifa2g05112 393 PRINTS DnaJ domain signature 328 348 IPR001623 -
Vifa2g05112 393 PRINTS DnaJ domain signature 312 327 IPR001623 -
Vifa2g05112 393 PRINTS DnaJ domain signature 294 312 IPR001623 -
Vifa2g05112 393 CDD RPS2 49 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05112 393 PRINTS Ribosomal protein S2 signature 132 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05112 393 PRINTS Ribosomal protein S2 signature 90 107 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05112 393 PRINTS Ribosomal protein S2 signature 153 167 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05112 393 PRINTS Ribosomal protein S2 signature 115 132 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05112 393 ProSiteProfiles dnaJ domain profile. 292 348 IPR001623 -
Vifa2g05112 393 ProSitePatterns Ribosomal protein S2 signature 2. 115 139 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa2g05112 393 Pfam DnaJ domain 292 352 IPR001623 -
Vifa2g05112 393 CDD DnaJ 292 345 IPR001623 -
Vifa2g05112 393 Pfam Ribosomal protein S2 113 169 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa2g05112 393 SMART dnaj_3 291 348 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05112 Vifa-Chr2 1527236749 1527238129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05112 13 162 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 74.000 6.25e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05112 K02998 - qsu:112004844 236.113