Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05110 ATGGGTCGCTTGCACTCCAAAGGTAAGGGTATTTCCAGTTCAGCTCTTCCATACAAGAGGACTGCTCCTTCTTGGCTCAAGATCTCTTCCCAGGATGTTGATGAAACCATCTGCAAGTTTGCCAAGAAAGATTCTCCGCATTTTGAAGCTCATGGTCTTGCTCCTGAAATTCCTGAAGATCTGTATCACTTGATCAAGAAGGCTGTCTCCATCAGGAAGCATTTGGAGAGGAACAGGAAGGATAAGGATTCGAAGTTCAGGCTCATTTTGGTTGAGAGCAGGATCCATCGTCTTGCTCGTTACTACAAGAAGACAAAGAAGCTTCCACCAGTATGGAAATATGAATCAACAACTGCCAGTACCCTTGTTGCTTAA 375 0.4453 MGRLHSKGKGISSSALPYKRTAPSWLKISSQDVDETICKFAKKDSPHFEAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05110 124 SUPERFAMILY S15/NS1 RNA-binding domain 47 115 IPR009068 -
Vifa2g05110 124 Pfam Ribosomal S13/S15 N-terminal domain 1 44 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vifa2g05110 124 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 44 IPR023029 -
Vifa2g05110 124 SMART Ribosomal_S13_N_2 1 53 IPR012606 GO:0003735|GO:0005840|GO:0006412
Vifa2g05110 124 Gene3D - 55 124 - -
Vifa2g05110 124 SMART Ribosomal_S15_2 43 122 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vifa2g05110 124 Pfam Ribosomal protein S15 51 118 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vifa2g05110 124 CDD Ribosomal_S15p_S13e 48 116 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vifa2g05110 124 ProSitePatterns Ribosomal protein S15 signature. 71 101 IPR000589 GO:0003735|GO:0005840|GO:0006412
Vifa2g05110 124 FunFam 40S ribosomal protein S13 56 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05110 Vifa-Chr2 1527099306 1527100718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05110 1 124 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 74.172 3.47e-73 213