Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05098 ATGGTTTCAGGTTCTGGCGCATGCGCAAAGCGAGTCGTGGTGGATGCTCGCCACCACATGCTCGATCGCTTAGCATCGATCGTAGCGAAGGAGCTTCTAAATGGACAGAAAGTTGTGGTTGTTAGATGCGAAGAGATATGCATCTCCGGTGGCCTAGTCAGACAGAAAATGAATTACTTGAGGTTTCTTCGTAAACAGATGAACACGAAGTCGTCTCACGGTCCTATTCATTTTCGTGCTCCGTCGAAGATTTTCTGGAGGACTCTTCGAGGAATGGTCCCACATAAGACGAAGCGTGGGGAAGCTGCTCTTGCTCGCCTAAAGGTTTATGAAGGTATTCCACCTCTATATGACAAGATCAAGAGAACGGTCGTCCCAGATGCACTTAAGGTATTGAGGCTTCAGAAAGGTCACAAGTACTGTCATCTTGGACAACTTTCATCTGAAGTAGGATGGAACTACTATGACACCATAAAGGAATTGGAAAAGAAGAGACAAAGGAAACTTTCTGTGAAGAGAAGTTCTAGTGCTGGACTTGGTGTTAATCCGTGA 552 0.4583 MVSGSGACAKRVVVDARHHMLDRLASIVAKELLNGQKVVVVRCEEICISGGLVRQKMNYLRFLRKQMNTKSSHGPIHFRAPSKIFWRTLRGMVPHKTKRGEAALARLKVYEGIPPLYDKIKRTVVPDALKVLRLQKGHKYCHLGQLSSEVGWNYYDTIKELEKKRQRKLSVKRSSSAGLGVNP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05098 183 PIRSF RPL13p_RPL13Aa_RPL16e_RPL13o 1 166 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa2g05098 183 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa2g05098 183 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa2g05098 183 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vifa2g05098 183 FunFam 60S ribosomal protein L13a-4 8 154 - -
Vifa2g05098 183 Pfam Ribosomal protein L13 10 114 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa2g05098 183 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa2g05098 183 PANTHER RIBOSOMAL PROTEIN L13 3 172 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa2g05098 183 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa2g05098 183 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05098 Vifa-Chr2 1525472320 1525472871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05098 1 171 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 83.626 7.52e-107 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05098 K02872 - gmx:100784830 316.235