Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05093 ATGACATCCTACGTCACCGTTTTGTTTCTCTTCTTTGTCTTGTCCATAACCACTTCCTTTTGTCTCCAAGAAATGGAGATTCTCCAAATGGCCAAATCACAAGTTTCACAAGCCATGAATTTGGTTGATAACTCTATGAAATTGCATGGCTTGGAAAGTTTGAGTATGTCATCATTGAATGAAACAAGTGCTTTGGCTTTAAGAGATTGTGCTAAACTCTATGAGGAGAGTGAGTTTAGGCTTAGTCATATGATGTTTGAAAAGAGTAAGAGTGGTTATACTAAAGATGATGCTCTTATTTGGGTGAGTGCATTGATGACAAATCATAGGACTTGTTTGGATGGGTTGAAAGAAAAAGGATATGTTCAAGATAATCAAATTTTGGGTACAAACTTGACAAGTTTGCTTGGACAAATACTTGTTTTGTATTCAAAAAACAAAGTCAAAGGCAAAGAAGAATCTGAGAGAGTTACAATATTAGAAGAAAAGAATGGACTATTAGAATCATGGAGTGTTACAAAGCATGAAGCAGATTTGACAGTGGCACAAGACGGTTCTGGAAGTTATAGAACAATAAAAGAAGCAGTTGATGCACTTGCTTCAAGGGGGCATAATCGTCCTTCAAGATTTGTTATACATGTAAAAGCAGGAGTGTATAATGAAAAAGTTGAGATCGGAAGTAAGTTGCATAATGTTATGTTTGTTGGAGATGGAATTGATAGAACTGTTGTCACTGGAAATAGGAATGTGAATAGTGTTGGAACCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGACATAACATTTGAGAACACAGCAGGACCACAAAGCCATCAAGCAGTAGCCCTCAAAGTAAGTTCAGACTTATCAGTCTTCTACCGATGCAGCTTCAAAGCCTACCAAGACACGCTCTACCTATTCTCGAATCGACAATTCTACCGTGACTGTCACATATATGGAACAATCGATTTCATATTCGGCGATGCAGCCGCAGTACTCCAAAACTGTGATATTACAGTCCGAAAACCAATGAGTCACCAATCAAACTATATTACCGCCCAAGGACGGGACAATCCCAATGAACCGACCGGATTTTCTATACAAAACTGTCGGGTTAGGCCCGATTCGGAGTTCGCTACGGTGAAGAATTCAGTGGAAACTTTTTTAGGTAGGCCTTGGAAGAGATATTCAAGGACAGTGTTTATGAAAAGTGATCTCGATGGTTTGGTTAATCCTAAGGGGTGGGGTGAATGGGAGGGAAATTTTGCAATTTCAACTTTGTATTATGGTGAATATATGAATATCGGTGATGGTGCTTCTACTGAAAATAGGGTTAATTGGCCTGGTTTTCATGTGTTGAAGAGTGTTGAGGAAGCTTCACCTTTTACGGTGAGTAGATTTTTGCAAGGTGGAAATTGGATTTCAGCTTCTGGAGTGCCATTTGATTCTGGAATTTGA 1479 0.3908 MTSYVTVLFLFFVLSITTSFCLQEMEILQMAKSQVSQAMNLVDNSMKLHGLESLSMSSLNETSALALRDCAKLYEESEFRLSHMMFEKSKSGYTKDDALIWVSALMTNHRTCLDGLKEKGYVQDNQILGTNLTSLLGQILVLYSKNKVKGKEESERVTILEEKNGLLESWSVTKHEADLTVAQDGSGSYRTIKEAVDALASRGHNRPSRFVIHVKAGVYNEKVEIGSKLHNVMFVGDGIDRTVVTGNRNVNSVGTTLNSATFDVSGDGFWARDITFENTAGPQSHQAVALKVSSDLSVFYRCSFKAYQDTLYLFSNRQFYRDCHIYGTIDFIFGDAAAVLQNCDITVRKPMSHQSNYITAQGRDNPNEPTGFSIQNCRVRPDSEFATVKNSVETFLGRPWKRYSRTVFMKSDLDGLVNPKGWGEWEGNFAISTLYYGEYMNIGDGASTENRVNWPGFHVLKSVEEASPFTVSRFLQGGNWISASGVPFDSGI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05093 492 FunFam Pectinesterase 172 492 - -
Vifa2g05093 492 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 122 IPR035513 -
Vifa2g05093 492 ProSitePatterns Pectinesterase signature 2. 325 334 IPR033131 -
Vifa2g05093 492 PANTHER PECTINESTERASE 27 482 - -
Vifa2g05093 492 Pfam Pectinesterase 178 477 IPR000070 GO:0030599|GO:0042545
Vifa2g05093 492 Pfam Plant invertase/pectin methylesterase inhibitor 29 124 IPR006501 GO:0004857
Vifa2g05093 492 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 145 IPR035513 -
Vifa2g05093 492 SMART PMEI_2 12 142 IPR006501 GO:0004857
Vifa2g05093 492 SUPERFAMILY Pectin lyase-like 176 490 IPR011050 -
Vifa2g05093 492 Gene3D - 172 492 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05093 Vifa-Chr2 1524417088 1524419951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05093 1 492 Carbohydrate Esterase AT3G60730 50.192 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05093 K01051 - gmx:100792852 711.835