Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05090 ATGATAGCTATTCGTTTGCTAGTAACACTTTTGGTTCCATTTTTACTTGCTTCTTTTGTTTCCTCATATTCCACCAATGAACTTAAACTATGGTGTAACCAAACCCCTAACCCTCAACCTTGTGAATATTTCTTGAACAATAACCCTTCTTACCAACACAAACTCATCAAACAAAAATCTGATTTCTTCACACTTTCATTACAACTTGTTCAACAAAGAGCACTCAAAGCCCATGCAAACACTCTTTCATTACGTTCAAAATGCACTAACTCACGTCAAATATCTGCTTGGGCTGATTGTGTTGACCTATATCAACAAACCATCCTTAAACTCAACAAAACCCTAGACACTAAAACTAAATGTTCTCAAGTTGATGCTCAAACATGGCTAAGTACTGCTCTCACAAATCTTGACACATGTAAATCTGGATTCTATGAACTTGGTGTTCAAGACTATGTCCTTCCTCTCATGTCCAACAATGTTACTAAATTGCTAAGCAATACTTTAGCTCTTAACAAAGTTCAATATCAAGAACCAAGCTACAAAGATGGTTTCCCAACATGGGTTAGACCAGGTGATAGAAAGTTGTTACAAACATCTTCGTCTTCTCAGCCTAATGCAGTAGTGGCAAAAGATGGATCCGGAAAATACACAACAGTTAGTGCAGCTGTAAATGCTGCACCGAAGAATAACAAAGGAAGATATGTTATACATGTCAAGGCTGGTGTTTACAATGAACAAGTTGAAATCAAAGCAAAGAATATCATGTTGGTAGGAGATGGTATTGGAAAAACTATAATCACCGGCAGCAAAAGTGTTGGAGGAGGAACCACGACTTTTCGTTCAGCCACAGTTGCTGTGGTTGGGGATGGATTTATTGGTCAAGATATAACATTTAGAAACACCGCTGGTGCAAGTAACCATCAAGCCGTTGCACTGCGTTCTGGATCAGACTTGTCTGTATTTTATAGATGTAGCTTTGAAGGTTATCAAGACACACTATATGTACATTCAGATAGACAATTCTACAAAGAATGTAACATTTACGGCACAGTTGACTTCATATTTGGTAATGCTGCTGCAGTTTTCCAAAACTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTTAACACAATTACTGCACAAGGTAGAATGGATCCAAATCAAAACACTGGTATTTCCATTCACAATTCTAGGGTTACCGCTGCTTCGGATTTGAAACCTGTTCAAGGTTCTGTGAGGACTTATCTTGGAAGACCATGGAAGCAATATTCCAGGACAGTTTTTATGAAGAGTTCTCTTGATAGTTTGATTCATCCAACTGGTTGGTTGGAATGGAGTGGTGATTTTGCATTAAGGACTTTATACTATGGTGAGTACATGAACACTGGTCCTGGTTCTTCTACAAGAAACCGAGTGAAATGGCAAGGTTATCATGTGATGAATAGTGCTTCTGAAGCATCAAAATTTACTGTGTCAAATTTCATTGCTGGAAACTCATGGTTACCTGCAACCAAAGTGCCTTTTACATCTACTCTTTAA 1545 0.3799 MIAIRLLVTLLVPFLLASFVSSYSTNELKLWCNQTPNPQPCEYFLNNNPSYQHKLIKQKSDFFTLSLQLVQQRALKAHANTLSLRSKCTNSRQISAWADCVDLYQQTILKLNKTLDTKTKCSQVDAQTWLSTALTNLDTCKSGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPSYKDGFPTWVRPGDRKLLQTSSSSQPNAVVAKDGSGKYTTVSAAVNAAPKNNKGRYVIHVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIGQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYKECNIYGTVDFIFGNAAAVFQNCNIFARNPPNKVNTITAQGRMDPNQNTGISIHNSRVTAASDLKPVQGSVRTYLGRPWKQYSRTVFMKSSLDSLIHPTGWLEWSGDFALRTLYYGEYMNTGPGSSTRNRVKWQGYHVMNSASEASKFTVSNFIAGNSWLPATKVPFTSTL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05090 514 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Vifa2g05090 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 174 IPR035513 -
Vifa2g05090 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 174 IPR035513 -
Vifa2g05090 514 FunFam Pectinesterase 200 514 - -
Vifa2g05090 514 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Vifa2g05090 514 PANTHER PECTINESTERASE 12 506 - -
Vifa2g05090 514 SMART PMEI_2 23 171 IPR006501 GO:0004857
Vifa2g05090 514 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Vifa2g05090 514 SUPERFAMILY Pectin lyase-like 201 513 IPR011050 -
Vifa2g05090 514 CDD PMEI-like_3 30 173 - -
Vifa2g05090 514 Pfam Pectinesterase 206 500 IPR000070 GO:0030599|GO:0042545
Vifa2g05090 514 NCBIfam pectinesterase inhibitor domain 7 173 IPR006501 GO:0004857
Vifa2g05090 514 Gene3D - 200 514 IPR012334 -
Vifa2g05090 514 SMART complete 239 416 IPR006633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05090 Vifa-Chr2 1524064817 1524066610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05090 1 514 Carbohydrate Esterase AT2G45220 66.538 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05090 K01051 - gmx:100783428 866.685