Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05088 ATGGCTTCATTTCCTTTGGTAACAACTCTTTTAGTTTTATTTCCCTTTCTTTTCTCAACTATTGTTTATGGTTACTCACTAAGTTCCATAAAATCATGGTGTAACCAAACTCCTTATCCTCAAACATGTGAGTATTATTTAACCAACAATGCTTTCAACCAAACCATAAAGAACAAATCCGATTTCTTCAAGGTTTCGCTTCAACTCGCGATCCAACGAGCACAAAAGGGCGAACAAAATACTCATTCTCTTGGCCCGAAGTGCCGTAACGCGCAAGAAAAAGCTGCTTGGGCTGATTGTCTTGAACTCTATGATTTCACAATCCAAAAGCTTACTCAAACAACCGACCCTAATTGCAAACATATCGATTCTCAGACATGGCTTAGTACGGCTTTGACGAATCTCGAAACATGCAAGAATGGATTTTATGACCTAGGTGTCACAAACTATGTCTTACCTTTGATGTCAAATAATGTAACAAAGTTGTTAAGTAACACCTTGGCTATCAACAAGGTTCCTTTCCAAAAACCTAGTTACAAAGATGGATTTCCATCATGGGTTAAGCCCGGTGATCGGAAGCTTCTTCAAACTTCCTCGGCCGCCTCGAATGCGAATGTCATCGTTGCTAAAGATGGTTCCGGTAAGTATACAACCGTGAAGGCCGCGACCGATGCTGCGCCGAGTGGTAGTGCAAGGTATGTGATATATGTGAAAGCTGGTGTTTACAATGAACAAGTTGAGATCAAAGCAAAGAATGTCATGTTGGTGGGAGATGGTATTGGGAGAACAATAATCACCGGTAGCAAAAGTGTTGGAGGTGGTTCCACTACCTTCCGTTCAGCAACCGTTGCTGCGGTTGGTGATGGGTTTATTGCTCAAGACATCACATTTAGAAACACAGCTGGAGGTGCAAATCATCAAGCTGTTGCATTCCGGTCGGGCTCCGATCTTTCGGTATTTTACAAATGTAGCTTCGAAGGATATCAAGACACACTATATGTTCATTCAGAGAGACAATTTTATAGAGAATGTAACATCTACGGAACCGTTGATTTCATCTTTGGCAACGCCGCGGTAGTGTTACAAAGTTGCAACATTATCGCAAGAAACCCACCACAAAAAACAATCACACTCACTGCTCAAGGACGAACCGATCCAAACCAAAACACCGGAATAATAATTCACAACTCTAGGGTTACAGCCGCGTCCGACTTAAGCCCTAGCTCGGTTAAATCGTACCTCGGTCGCCCGTGGCAAAAATATTCAAGAACCGTTTTCATGAAAACTTCTATTGATGGTTTTATTAACCCTGCTGGTTGGTTGGAATGGAGTGGTAATTTTGCTTTGGATACTTTGTACTATGCTGAATATGCTAATACAGGTGCAGGAGCTTCCACTTCAAATAGGGTTACATGGAAAGGTTACCATGTTCTTACTAGTGCTTCTCAAGCCACACCATTCACTGTTGGAAATTTCATTGCTGGAAGTTCTTGGATCCCGAGCTCCGGCGTGCCTTTTACCGCCGGACTTTGA 1533 0.424 MASFPLVTTLLVLFPFLFSTIVYGYSLSSIKSWCNQTPYPQTCEYYLTNNAFNQTIKNKSDFFKVSLQLAIQRAQKGEQNTHSLGPKCRNAQEKAAWADCLELYDFTIQKLTQTTDPNCKHIDSQTWLSTALTNLETCKNGFYDLGVTNYVLPLMSNNVTKLLSNTLAINKVPFQKPSYKDGFPSWVKPGDRKLLQTSSAASNANVIVAKDGSGKYTTVKAATDAAPSGSARYVIYVKAGVYNEQVEIKAKNVMLVGDGIGRTIITGSKSVGGGSTTFRSATVAAVGDGFIAQDITFRNTAGGANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQSCNIIARNPPQKTITLTAQGRTDPNQNTGIIIHNSRVTAASDLSPSSVKSYLGRPWQKYSRTVFMKTSIDGFINPAGWLEWSGNFALDTLYYAEYANTGAGASTSNRVTWKGYHVLTSASQATPFTVGNFIAGSSWIPSSGVPFTAGL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05088 510 Pfam Plant invertase/pectin methylesterase inhibitor 29 169 IPR006501 GO:0004857
Vifa2g05088 510 Pfam Pectinesterase 205 495 IPR000070 GO:0030599|GO:0042545
Vifa2g05088 510 SUPERFAMILY Pectin lyase-like 199 509 IPR011050 -
Vifa2g05088 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 172 IPR035513 -
Vifa2g05088 510 CDD PMEI-like_3 32 171 - -
Vifa2g05088 510 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Vifa2g05088 510 Gene3D - 199 510 IPR012334 -
Vifa2g05088 510 FunFam Pectinesterase 199 510 - -
Vifa2g05088 510 NCBIfam pectinesterase inhibitor domain 8 172 IPR006501 GO:0004857
Vifa2g05088 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 172 IPR035513 -
Vifa2g05088 510 SMART PMEI_2 25 169 IPR006501 GO:0004857
Vifa2g05088 510 PANTHER PECTINESTERASE 17 500 - -
Vifa2g05088 510 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05088 Vifa-Chr2 1522642125 1522644799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05088 1 510 Carbohydrate Esterase AT2G45220 67.573 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05088 K01051 - gmx:100794948 850.121