Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05083 ATGCACGGAGGAAGAACCACCAAAGTACGGTTGGACGGTGAGGAGACGAGTTGGAGAAGAGTTGGAGGAAGAACCACAGTTGGACGACGGAAATCATTTCATCTCCAGATTGCAATCGCGTCTCAAAATCATTTTATCGTTTCATCGTTTCAGGTTACAAGGAATCGCTTCTCAAAATCGCTTCAGGTTGTTGAAGCTAATCATCCAGGGAAACCAAATGTTTCTAGGGCTGAGCTTAAGGAAAAACTGGCAACTATGTATAATGTGAAGGACACTAACACTGTGTGTTTAGTTGAGTTTTTTGTGGATGTAGATGTTAAATGTCCACAATCGGTTGCTCCACCACTTTGTTTCTCTTCTTCTAAAGCCAATTTCAAGAAGTTCTGA 387 0.4186 MHGGRTTKVRLDGEETSWRRVGGRTTVGRRKSFHLQIAIASQNHFIVSSFQVTRNRFSKSLQVVEANHPGKPNVSRAELKEKLATMYNVKDTNTVCLVEFFVDVDVKCPQSVAPPLCFSSSKANFKKF 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05083 128 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 63 97 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vifa2g05083 128 Gene3D - 41 103 - -
Vifa2g05083 128 Pfam Ribosomal protein S24e 63 96 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05083 Vifa-Chr2 1519630541 1519637583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05083 52 100 Cytoplasmic Ribosomal Protein Gene Family AT3G04920 48.980 3.86e-10 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05083 K02974 - fve:101299698 57.7658