Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05082 ATGGTGTTATCGGAACTGACTTGTTGTTGTTATCGGAACATCGGAGAGAGTTGCTTATGCACGGAGGAAGAACCACCAAAGTACGGTTGGACGGTGAGGAGACGAGTTGGAGAAGAGTTGGAGGAAGAACCACAGTTGGACGGTGAATGGGAGGAGACGAGTTACAAGGAATCGCTTCTCAAAATCGCTTCAGGTTGCAATCGCTTCTCAAAATCGCTTCAGGTTGTTGAAGCTAATCATCCAGGGAAACCAAATGTTTCTAGGGCTGAGCTTAAGGAAAAACTGGCAACTATGTATAATGTGAAGGACACTAACACTGTGTGTTTAGTTGAGTTTTTTGTGGATGTAGATGTTAAATGTCCACAATCGGTTGCTCCACCACTTTGTTTCTCTTCTTCTAAAGCCAATTTCAAGAAGTTCTGA 423 0.435 MVLSELTCCCYRNIGESCLCTEEEPPKYGWTVRRRVGEELEEEPQLDGEWEETSYKESLLKIASGCNRFSKSLQVVEANHPGKPNVSRAELKEKLATMYNVKDTNTVCLVEFFVDVDVKCPQSVAPPLCFSSSKANFKKF 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05082 140 Gene3D - 67 115 - -
Vifa2g05082 140 Pfam Ribosomal protein S24e 75 108 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vifa2g05082 140 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 75 109 IPR012678 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05082 Vifa-Chr2 1519630485 1519637583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05082 75 112 Cytoplasmic Ribosomal Protein Gene Family AT3G04920 57.895 4.66e-10 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05082 K02974 - fve:101299698 56.225