Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05081 ATGTCCTCTTCATCATCCACTTCCTTTTCACCGGACCAGCAACAACAACAGCAGCAGCAACAACTCTCTCCTTCCGACCAGCTCTGTTATGTTCATTGCAATTTCTGTGACACTGTTCTCGCGGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACAGTGAGATGTGGCCATTGCACCAACCTTCTCTCGGTTAACATGCGCGCTTTGCTCCTTCCTGCTGCTAATCAGTTTCATCTCGGACACAACTTCTTCAACCCTCAAAATCTTATGGAGGAGATTCGAAATGTACCTTCGACAAACATGATGATGAATCAGCTTCCAAATCCAAATGATTTGATGATGAACACAATGATGAGAGGAGGACATCATGAAGAAATCCCTAAACCTCCTCCTGCGAATCGACCTCCGGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATTAAGGATGAAATTCAACGTATCAAAGCTGGAAATCCTGATATAAGCCACAGAGAGGCTTTTAGTGCAGCTGCAAAAAATTGGGCCCACTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGACTCAGAGGACATGATTATGAAAGATGGGTTTTTCACACAAGCAAATGTAGGTGTCTCTCCCTACTAG 678 0.4454 MSSSSSTSFSPDQQQQQQQQQLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRALLLPAANQFHLGHNFFNPQNLMEEIRNVPSTNMMMNQLPNPNDLMMNTMMRGGHHEEIPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQDSEDMIMKDGFFTQANVGVSPY 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05081 225 Pfam YABBY protein 24 189 IPR006780 GO:0007275
Vifa2g05081 225 CDD HMG-box_SF 143 179 - -
Vifa2g05081 225 FunFam Axial regulator YABBY 134 206 - -
Vifa2g05081 225 MobiDBLite consensus disorder prediction 1 20 - -
Vifa2g05081 225 MobiDBLite consensus disorder prediction 123 137 - -
Vifa2g05081 225 SUPERFAMILY HMG-box 134 183 IPR036910 -
Vifa2g05081 225 PANTHER PROTEIN YABBY 6-RELATED 5 201 IPR006780 GO:0007275
Vifa2g05081 225 Gene3D High mobility group box domain 129 186 IPR036910 -
Vifa2g05081 225 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05081 Vifa-Chr2 1518580327 1518583376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05081 35 223 C2C2-YABBY Transcription Factor Family AT4G00180 63.507 3.61e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa2g05081 YABBY 5.2e-74 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05081 K25796 - gmx:100781267 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05081 2 1518580327 1518583376 Vifa2g05081 2 1518580327 1518583376 ECH