Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05073 ATGAAGTTACCTTTTGAGGAATTTCAAGTGAAGGGAGTGTTGGATTATTTCTCTTCAACTTCAAATTCAACTTCAAATTCAACTTCAACAGCTTCAGATTCATTTTCATTGCTTTTGAATCAGCCACAAAATCAGCAACAACATCAGCAACAGAATTGGACAACGTTGGACAAACAAGATTATTGCTATGTGGAGCCTACTTCTGTTCTTGATTCAAGAAGAAGCCCTAGTCCTCCAATTTCATCTTCAACAATGTCGTCTTCTCTTGGTAGTGGTTCAAACAACAACAACAACAACACTTCGATGGTAGTTTCGGAGAATCTGGCTCGTATCTCGAACTCGAACGAGGAGGGTTTGGAGAATAGTGAAGAGAAATGTGGTGGTGGTATGAGGATGGAGGATTGGGAGGGACAAGATCAGTCGCTTTTGAGGTTAATCATGGGAGATGTTGAAGACCCTTCTGCTGGTTTGAACAAAATCTTGCAAAACAGTGGTTGTGGTTCTGAAAATGCCGATTTTCACGGCGGTTTCGGTGTTTTGGAACATCAACAACAACAACAAGGGTTGAACATGGACCCTTCTGTTGGGAATTATAATGTTTTTCCTTTCAATGCTGAGAATTTGGATAGTCACAATGCGAAATCTGGTTCTGAATTTTTGTTTGGTAACTATCCTATGTTGACATCATCGTCGACAACTTCCGGTGTGTTTTGCTCTCAGCAACAGCAACAGCAGCAAGGGTTCGGTGTTGTAGAGGAGAAGCCTCAAGTTATTAACCCTAATTTTATGATGAACCATAATCAAGTTCAGTTCGCTGATAATCCTTCTTTCTTTGTTCCATTGCCGTATCCTCAAGTGCAGGAGCAACAGGTTTTTTCTCAGAATCAGTTGAAACGGCCGCTTTTCGACGCGGTTGGGAACAATTATCCGGTACCGAGGTTACCGTTTCTGGATTCTGGTCAAGAAATGTTTGCTCGGAGGCATCAGCAGCAGCATCAGCAAACACAGCTTCCATTGTTTCCCAATCATCATCTGCAGCAGCATCAGCAACAACAGCACCAGCAAACGCCGGTTGTTCCCTTTGCGAAGCAGCAGAAGATGAGTTCTACTACTACTACCACCACCGGAGACGATGCAAGCAATCAGGTTCAGCAGAGTATATTTGATCAACTATACAGAACTGCTGAGCTGATAGAAGCTGGTAATCCGGTTCAAGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCAATTGGTAAGCCTTTTCATAGGGCTGCTTTTTACACTAAGGAAGCTTTACAACTAATGCTTCATTCAAACAGTAACAATCTCTATGCTTTTTCGCCGATAAATTTCATATTCAAAATCGGTGCTTATAAGGCTTTTTCCGAGATATCGCCTGTTCTTCAGTTTGCAAACTTTACTTGTAATCAAGCCCTTATTGAAGCCTTGGAAAGGTTCGATCGAATTCATGTTATTGATTTTGATATTGGGTTTGGAGTACAATGGTCTTCTTTTATGCAAGAGCTTGTTTTAAGAGGTAACGGTACACCTTCTCTTAAGATTACCGCTGTTGTATCGCCCTCATCTTGCAATGAGGTCGAGCTCAATTTCACCCGAGAAAATTTGAGTCAGTATGCAAAAGACCTCGACATGCTGTTTGAGTTCAACGCTTTGCACATCGAATCATTGAGCTCTCAGTCGTTTCCTCTACCGGGTCATCTATTCGATAACAGCGAGGCCGTTGGTGTGAACTTTCCTGTTTCTAGTTTCATAAACCATCCATCATGTTTCCCTCTGGCCCTCCACTTTCTCAAGCAGCTGAAGCCAAAAGTTATCGTCACATTGGATAAAAACTCCGACCGCATCGACGCGCCTCTTCCAACCAACACTGTTCATGTTCTTCAATCGTACTCATCCTTGCTCGAATCACTTGATGCTGTAAACGTGAACCTCGACGTACTCCAAAAGATCGAGCGTCATTTCATCCAACCAACCATCAACAAAATCATTCTCAGCCACAACAACCGTTCGCCCGACAAACTACCTCCATGGAGGAACATGTTTCTTCAATCCGGCTTCTCTCCGTTCACATTCAGCAACTTCACGGAAGCGCAAGCCGAGTGCTTGGTTCAAAGGGCACCGGTGAGAGGATTTCAAGTGGAAAGAAAGCCTTCATCTCTTGTTCTATGCTGGCAGAGGAAAGAACTCATCTCAATTTCAACTTGGAGATGCTAA 2244 0.4327 MKLPFEEFQVKGVLDYFSSTSNSTSNSTSTASDSFSLLLNQPQNQQQHQQQNWTTLDKQDYCYVEPTSVLDSRRSPSPPISSSTMSSSLGSGSNNNNNNTSMVVSENLARISNSNEEGLENSEEKCGGGMRMEDWEGQDQSLLRLIMGDVEDPSAGLNKILQNSGCGSENADFHGGFGVLEHQQQQQGLNMDPSVGNYNVFPFNAENLDSHNAKSGSEFLFGNYPMLTSSSTTSGVFCSQQQQQQQGFGVVEEKPQVINPNFMMNHNQVQFADNPSFFVPLPYPQVQEQQVFSQNQLKRPLFDAVGNNYPVPRLPFLDSGQEMFARRHQQQHQQTQLPLFPNHHLQQHQQQQHQQTPVVPFAKQQKMSSTTTTTTGDDASNQVQQSIFDQLYRTAELIEAGNPVQAQGILARLNHQLSPIGKPFHRAAFYTKEALQLMLHSNSNNLYAFSPINFIFKIGAYKAFSEISPVLQFANFTCNQALIEALERFDRIHVIDFDIGFGVQWSSFMQELVLRGNGTPSLKITAVVSPSSCNEVELNFTRENLSQYAKDLDMLFEFNALHIESLSSQSFPLPGHLFDNSEAVGVNFPVSSFINHPSCFPLALHFLKQLKPKVIVTLDKNSDRIDAPLPTNTVHVLQSYSSLLESLDAVNVNLDVLQKIERHFIQPTINKIILSHNNRSPDKLPPWRNMFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISISTWRC 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05073 747 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 350 741 IPR005202 -
Vifa2g05073 747 MobiDBLite consensus disorder prediction 67 131 - -
Vifa2g05073 747 MobiDBLite consensus disorder prediction 117 131 - -
Vifa2g05073 747 Pfam GRAS domain family 389 746 IPR005202 -
Vifa2g05073 747 ProSiteProfiles GRAS family profile. 378 746 IPR005202 -
Vifa2g05073 747 MobiDBLite consensus disorder prediction 70 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05073 Vifa-Chr2 1512189756 1512191999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05073 387 747 GRAS Transcription Factor Family AT4G00150 53.444 1.95e-121 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa2g05073 GRAS 4e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05073 - - psat:127101146 1221.45