Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05050 ATGGAAAAACACAAGTGCAAATATTGTTATAGAAGTTTCTCCAACGGAAGAGCATTAGGCGGACACATGAGATCACACATGATGAACCTACCAATTCCTCCCAAACCAACCAGGTCACCACCATCACCACCACCACCACCACCACCAACGATTCAACTCAGTTTCGAAGCCGAGTCAGACGCATCTCCTTCATCCTCATCTCTCTATAGCCTAAGAGAGAATCCAAAGAGAAGCTTCATCTTCACAGATCCCAATCAATTCATCGATGCCGGTTCTATAATTCTCCAAGAAAGCAGAGAAAGCGAAACCGAAACTGAGTCGTCGAAAAATCCAACTCGTCCACGATCCAAACGAGTCAAGAAACTCGACACGGCGAAACCGAACGAGTCGGGGCTGAGTTCTTCTTCGGATATAACTACCGAAGAAGACATCGCTTTTTGTCTCATGTTGCTTTCTCGCGACAATAACAACAATTGGAGAACAAAAACACAAACACAGACACAACCACAACAACACAATTATCATGACCAAGAACAACAAGAACAACATCATTATTATATCGATGAAGAAGACGACGAAGACGACGAAGAAGAAGAAATCGAGGAAATCGAAGAAGAAGAAAGTGAAGCTGAATCTGAGGAGGAGGAGGAAGAGAAACCATTGAAGAAAGTACGAGGAAGATACAAATGCGACACGTGTAACAAAGTGTTTCGATCTTATCAAGCACTTGGAGGACACAGAGCGAGTCACAAGAAAACTAAAATACTTGTTGGCGATTCAACTTCACAACATGATGACAAAATTAACATCGAAAACATTAATGTTAATATTAATGTTAATGTTGAAAAGAAAATTCATGAATGTCCTGTTTGTTTTAGAGAATTTTCTTCAGGTCAAGCACTGGGTGGACATAAGAGAACACATGGTATTGGAACATCATCAGCAGCAGCATCAACATCAACAACAACAATAGCAGCAGCGGTTACAGCAGCAACAAACGTCGAGGTTGTTGTTCGAAGTTCTGTGAAATTCGGAGATAGTTTGTTAGATCTAAATCTTCCTGCTCCTATGGATGATCCTGATGGTGAGGGTGGTTCTGCAGTTTCCGATGCATAA 1116 0.4158 MEKHKCKYCYRSFSNGRALGGHMRSHMMNLPIPPKPTRSPPSPPPPPPPTIQLSFEAESDASPSSSSLYSLRENPKRSFIFTDPNQFIDAGSIILQESRESETETESSKNPTRPRSKRVKKLDTAKPNESGLSSSSDITTEEDIAFCLMLLSRDNNNNWRTKTQTQTQPQQHNYHDQEQQEQHHYYIDEEDDEDDEEEEIEEIEEEESEAESEEEEEEKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKTKILVGDSTSQHDDKINIENINVNINVNVEKKIHECPVCFREFSSGQALGGHKRTHGIGTSSAAASTSTTTIAAAVTAATNVEVVVRSSVKFGDSLLDLNLPAPMDDPDGEGGSAVSDA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05050 371 ProSitePatterns Zinc finger C2H2 type domain signature. 288 308 IPR013087 -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 95 137 - -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 33 52 - -
Vifa2g05050 371 SUPERFAMILY beta-beta-alpha zinc fingers 227 308 IPR036236 -
Vifa2g05050 371 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Vifa2g05050 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 19 73 - -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 352 371 - -
Vifa2g05050 371 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Vifa2g05050 371 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vifa2g05050 371 SMART c2h2final6 228 250 IPR013087 -
Vifa2g05050 371 SMART c2h2final6 4 26 IPR013087 -
Vifa2g05050 371 SMART c2h2final6 286 308 IPR013087 -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 159 223 - -
Vifa2g05050 371 Pfam C2H2-type zinc finger 286 308 - -
Vifa2g05050 371 Pfam C2H2-type zinc finger 227 252 - -
Vifa2g05050 371 Pfam C2H2-type zinc finger 4 27 - -
Vifa2g05050 371 Gene3D Classic Zinc Finger 225 308 - -
Vifa2g05050 371 Coils Coil 186 220 - -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 187 215 - -
Vifa2g05050 371 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 369 IPR044303 GO:0006355
Vifa2g05050 371 MobiDBLite consensus disorder prediction 99 125 - -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 55 73 - -
Vifa2g05050 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 286 308 IPR013087 -
Vifa2g05050 371 MobiDBLite consensus disorder prediction 159 175 - -
Vifa2g05050 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05050 Vifa-Chr2 1504108765 1504109880 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05050 1 356 C2H2 Transcription Factor Family AT2G45120 36.997 3.11e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g05050 zf-C2H2_6 6.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05050 - - psat:127105004 479.944