Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05048 ATGGCATTGATTGTGGATCAACAATCAAACTTCAAACACTTCTGTAAAATTTGCAAAAAAGGCTTTGGATGTGGAAGAGCATTGGGAGGACATATGAGAGCTCATGGGATAGGCGACGAAAGTGGTCAAATGGATGACGATGATCCGGCGAGCGACTGGGAAGGTGGCAATGCCAATAATATTGTTCCACAAACAAGTAACAAGCGCATGTATTCTCTTAGAACAAATCCTAATAAGCAAAAAAGTTGTAGGGTATGTGAGCATTGTGGCAAAGAATTTTTCTCTTGGAAAGCTTTTCTAGAACATGGAAAATGCAACTCAGATGAAGCGGATGAAGAGTCTCCTGAATCCTCTCCAGAATCAAACGCTATGGCCGACGATGGTGACGGCGATGGCGCCGATGGGAGGAGAGGATGTGGTTGGTCCAAAAGAAAAAGGTCAATGCGAACTAAAGTAGGTAGTTACAATAATAATAATAATAATTATATTTGTCCTTCAACCGAAGAAGAAGACCTAGCAAATTGTTTAATGATGTTATCAAATGCTATTGTGAATCCCCTTGAGGCAGAACCAGAAGAATCATGTGCCTCAGCTTGTAGAGATGAAGAAAGAAGAAATCCTATGAATTTCATCGCACCATTGTCTTATAGAATCCCTTATGAAACCAATAACAATAACAACAACATCAACAACAAAGCCAAAGGTGTTGCAAAGGGTTTATTTGAATGCAAAGCATGCAAAAAAGTTTTCAACTCCCACCAAGCTTTAGGTGGCCATAGAGCCAGTCACAAAAAGGTTAAAGGATGTTTTGCTGCAAGACTTGATCAAAACCTTGATGAAACCATAGCTGAGGATGATGTCATGACACATGATGAGTTCTTCCCTCCAAAATCAATCTCAACTCTACAATATGATCAAGGAACCTCTAGTAACCCTACATTAATGCCTTCTTCTTCTTCCAAGAGAAAATCAAAAGTGCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCTGGACAAGCATTAGGTGGTCACAAAAGATGTCATTGGATTACATCAAATGCACCTGATACATCTACATTGGCAAGGTTTCAACAATTTCAAGATCATATGGAACAAATACCTAAGTTTGATAATTCTTCTGAGCCTATTGATCTTAAACTTGATCTTAATCTTCCAGCTCCCACCAATACACAAATTTACATGCAATCATGGGGTGCAACTGCAAACCCTAGCGCAAATGCAATAAAGGACAATAATATTATTAAAGAAGATAATAGTAGCCAATGTATGATTCAACAAAATCAAAATAACAACCAAGTTGATCAAAATAATGACACTCATGATGAAAACAACAAAAACAACAACCTTAATTCTTTGGTACAAAACATTGATAATAATGAAGATGATAGTAAGGTTAAGTTGGCAAAATTAAGTGAACTAAAAGATGTAATCAATATTGGTGGAAGCTCTTCACCTTGGTTGCAGGTTGGAATTGGTGCAACAACCGATGTGAGGAATGATACGTAA 1530 0.3765 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGQMDDDDPASDWEGGNANNIVPQTSNKRMYSLRTNPNKQKSCRVCEHCGKEFFSWKAFLEHGKCNSDEADEESPESSPESNAMADDGDGDGADGRRGCGWSKRKRSMRTKVGSYNNNNNNYICPSTEEEDLANCLMMLSNAIVNPLEAEPEESCASACRDEERRNPMNFIAPLSYRIPYETNNNNNNINNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNLDETIAEDDVMTHDEFFPPKSISTLQYDQGTSSNPTLMPSSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDHMEQIPKFDNSSEPIDLKLDLNLPAPTNTQIYMQSWGATANPSANAIKDNNIIKEDNSSQCMIQQNQNNNQVDQNNDTHDENNKNNNLNSLVQNIDNNEDDSKVKLAKLSELKDVINIGGSSSPWLQVGIGATTDVRNDT 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05048 509 SUPERFAMILY beta-beta-alpha zinc fingers 240 349 IPR036236 -
Vifa2g05048 509 Gene3D Classic Zinc Finger 11 105 - -
Vifa2g05048 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 327 349 IPR013087 -
Vifa2g05048 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Vifa2g05048 509 SMART c2h2final6 241 263 IPR013087 -
Vifa2g05048 509 SMART c2h2final6 13 35 IPR013087 -
Vifa2g05048 509 SMART c2h2final6 84 104 IPR013087 -
Vifa2g05048 509 SMART c2h2final6 327 349 IPR013087 -
Vifa2g05048 509 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Vifa2g05048 509 ProSitePatterns Zinc finger C2H2 type domain signature. 329 349 IPR013087 -
Vifa2g05048 509 MobiDBLite consensus disorder prediction 301 320 - -
Vifa2g05048 509 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Vifa2g05048 509 SUPERFAMILY beta-beta-alpha zinc fingers 13 103 IPR036236 -
Vifa2g05048 509 MobiDBLite consensus disorder prediction 37 67 - -
Vifa2g05048 509 PANTHER OS02G0659100 PROTEIN 2 506 - -
Vifa2g05048 509 MobiDBLite consensus disorder prediction 106 144 - -
Vifa2g05048 509 Gene3D Classic Zinc Finger 238 349 - -
Vifa2g05048 509 MobiDBLite consensus disorder prediction 439 463 - -
Vifa2g05048 509 Pfam C2H2-type zinc finger 13 35 - -
Vifa2g05048 509 Pfam C2H2-type zinc finger 241 265 - -
Vifa2g05048 509 Pfam C2H2-type zinc finger 326 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05048 Vifa-Chr2 1502728887 1502730416 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05048 123 392 C2H2 Transcription Factor Family AT1G02040 34.182 6.56e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa2g05048 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05048 - - ahf:112720137 644.425