Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05045 ATGCAAGATCAATTCAGCATCATCCTTTATTTTTTTCTTGTTGTTTTTGTTCCATTCCATGTGATCTCACTATACCAACCTTTCAATGAAGATATGCTAGGGTTGATTGTGTTCAAATCAGGTCTAGAAGATCCAAAAAACAAACTTTCTTCATGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTAAAATGTGACCCTTCAACTAATAGAGTTTCTTCTCTTGTTCTTGATGGTTTCTCTCTTTCGGGCCATATCGGTAAGAGTGTTATGAAGTTGCAGTTCCTTCAAATTCTTTCACTTTCTAGGAACAACTTCACTGGCAAAATAAACCATGATCTTCTTGTTACACTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAATAGTCTCTCTGGAACAATTCCGGATGAGCTTTTTCGTCAATGTTGGTCGTTAAGAGTTTTATCATTGGCGAAAAACAATCTAACGGGTAAGATTCCCGAGTCTCTGAGCTCGTGCTACTCGTTAGCAAGTTTGAACTTTTCGTCTAATCAGTTGAATGGTGAATTAGATTCTGGAATGTGGTTTTTGAAGGAACTTCAATCGCTTGATCTATCGAATAATTTTCTTAAAGGCGAAATTCACGAAGGAGTTCAAAATCTATATGATTTGAGAGAGTTAAGGCTAGGGAGGAATTTTTTCACCGGTAGGATTCCGGAGAATATAGGAAACTGTTTGCTCTTGAAGTTGATCGATTTCAGTTATAATCTTCTAACCGATGCAATCCCGGAGTCAATACAAAGACTCACTTCATGCACATTATTGAATTTGCAAGTGAATTTTCTCAATGAAAGCATTCCTCGTTGGATCGGCGAATTGAATAATCTTGAGATATTGGATCTTTCTTCTAACACGTTTTCGGGTTCCATTCCTTCTGGAATCGGAGGTCTTACAAGTTTGCAAGTTTTGAATTTATCTACAAACAATATATTTGGTTCGATTCCGGCTAGTATAAAAGAGCTTAAATCTTTGTATGTTCTTGACTTAAGTGATAACAAGCTTAATGGAAGCATTCCTTTAGAAATAGAAGGAGCAGTTTCACTTGTTGAGTTGAAGCTTCAAAGGAATTTGTTAGGCGGAAGAATTCCACTTCAAATTGCTAAATGTTCAGCTCTAAAATCTTTGAATCTTGCACACAACAATCTTATTGGTTCAATCCCTACATCAATTGCAAACCTAACAAATCTTCAATATGCAGATTTGTCATGGAACAAACTCTCCGGAACTTTACCGAAAAAGCTCACAAATCTTACACATCTTTCCTCATTCAATGTTTCATATAACCATCTTCAAGGTGAACTTCCAATTGGTGGATTCTTCAACACAATCACTCCCTCACTTGTTCATGGAAATCCATTGTTGTGTGGTTCTGTTGTTAACCACTCATGCGACCGATCTTATCATCCTAAACCTATTGTTTTGAACCCTAATTCAAATTACAACAACTCAAGAACTTCATTACAAAACCATCATCATAAGATAATGCTTAGTATATCGGTTTTTATTGCTATTGGTGCGGCGATTTCTATTGTTGTTGGTGTTGTTGCTGTTACTCTTTTGAATATTCATGTCAGGTCTTTGGTTTCGCATTCTGGTTCTCCGTTTGGATTATCCGGTGGTGAGGATAATAGTTTTTCGCTCGAAAAAGATCCAAAATGTGGAAAACTTGTGATGCTTAATGGCGATGTTATTGAGTTTTCCGATGAGGTGAATAATCTTCTTAAAGAAGGTAATGAAATCGGCCGTGGTGGATTTGGAGTTGTTTACTGTGTTGTCCTTCGAGATCAGAATTTCGTTGCGATCAAGAAGCTTATAGGTTCGAGTTTGACGAAATCACAAGAAGATTTTGAGAGAGAAGTTCAAAAGCTTGAGGGAGTTTGCATAAGCTTCTACATGACGATGATCAAAGCAGAATTGTGTTTTCTTGGAGAGCAAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCGCTAGGATACACGGCTCCTGAGTTTGCGTGTCGCACGGTTAACATAACTGAAAAATGCGATGTATATGGTTTTGGAATTTTGATTCTAGAAATTGTGAGCGGAAAAAAGCCGGTGGAATATATGGAGGATGATGTCGTTATTCTATGTGATATGGTAAGAAGTTCATTAGAGGATGGGAAAATTGAACAATGTATCGATGAAAAACTTGTTGGTCATTTTTCACCTGAAGAAGTGATTCCTTTGATTAAATTAGGATTGGTTTGTGCGTCGCAAGTACCTTCGAGTCGTCCCAATATGGATGATGTTGTCAACATATTAGAGACGATTCAATGCTCTTCAGAAGGACAACAAGAGGAAATACAATGA 2385 0.3706 MQDQFSIILYFFLVVFVPFHVISLYQPFNEDMLGLIVFKSGLEDPKNKLSSWNEDDYSPCNWEGVKCDPSTNRVSSLVLDGFSLSGHIGKSVMKLQFLQILSLSRNNFTGKINHDLLVTLWNLKVVDLSENSLSGTIPDELFRQCWSLRVLSLAKNNLTGKIPESLSSCYSLASLNFSSNQLNGELDSGMWFLKELQSLDLSNNFLKGEIHEGVQNLYDLRELRLGRNFFTGRIPENIGNCLLLKLIDFSYNLLTDAIPESIQRLTSCTLLNLQVNFLNESIPRWIGELNNLEILDLSSNTFSGSIPSGIGGLTSLQVLNLSTNNIFGSIPASIKELKSLYVLDLSDNKLNGSIPLEIEGAVSLVELKLQRNLLGGRIPLQIAKCSALKSLNLAHNNLIGSIPTSIANLTNLQYADLSWNKLSGTLPKKLTNLTHLSSFNVSYNHLQGELPIGGFFNTITPSLVHGNPLLCGSVVNHSCDRSYHPKPIVLNPNSNYNNSRTSLQNHHHKIMLSISVFIAIGAAISIVVGVVAVTLLNIHVRSLVSHSGSPFGLSGGEDNSFSLEKDPKCGKLVMLNGDVIEFSDEVNNLLKEGNEIGRGGFGVVYCVVLRDQNFVAIKKLIGSSLTKSQEDFEREVQKLEGVCISFYMTMIKAELCFLGEQDHCVLSSKIQSALGYTAPEFACRTVNITEKCDVYGFGILILEIVSGKKPVEYMEDDVVILCDMVRSSLEDGKIEQCIDEKLVGHFSPEEVIPLIKLGLVCASQVPSSRPNMDDVVNILETIQCSSEGQQEEIQ 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05045 794 SUPERFAMILY L domain-like 51 279 - -
Vifa2g05045 794 Pfam Leucine Rich Repeat 388 409 IPR001611 GO:0005515
Vifa2g05045 794 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 83 779 - -
Vifa2g05045 794 Gene3D Ribonuclease Inhibitor 28 191 IPR032675 -
Vifa2g05045 794 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vifa2g05045 794 PRINTS Leucine-rich repeat signature 123 136 - -
Vifa2g05045 794 PRINTS Leucine-rich repeat signature 337 350 - -
Vifa2g05045 794 ProSitePatterns Protein kinases ATP-binding region signature. 596 619 IPR017441 GO:0005524
Vifa2g05045 794 SUPERFAMILY L domain-like 215 472 - -
Vifa2g05045 794 Gene3D Transferase(Phosphotransferase) domain 1 649 794 - -
Vifa2g05045 794 FunFam Leucine-rich repeat receptor-like protein kinase 28 187 - -
Vifa2g05045 794 SMART LRR_typ_2 120 144 IPR003591 -
Vifa2g05045 794 SMART LRR_typ_2 289 312 IPR003591 -
Vifa2g05045 794 SMART LRR_typ_2 433 457 IPR003591 -
Vifa2g05045 794 SMART LRR_typ_2 337 361 IPR003591 -
Vifa2g05045 794 SMART LRR_typ_2 313 336 IPR003591 -
Vifa2g05045 794 SMART LRR_typ_2 193 216 IPR003591 -
Vifa2g05045 794 SMART LRR_typ_2 217 241 IPR003591 -
Vifa2g05045 794 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 288 482 - -
Vifa2g05045 794 SMART LRR_sd22_2 193 216 - -
Vifa2g05045 794 SMART LRR_sd22_2 409 435 - -
Vifa2g05045 794 SMART LRR_sd22_2 289 315 - -
Vifa2g05045 794 SMART LRR_sd22_2 337 358 - -
Vifa2g05045 794 Pfam Protein tyrosine and serine/threonine kinase 665 720 IPR001245 GO:0004672|GO:0006468
Vifa2g05045 794 Gene3D Ribonuclease Inhibitor 192 482 IPR032675 -
Vifa2g05045 794 Pfam Leucine rich repeat 271 326 IPR001611 GO:0005515
Vifa2g05045 794 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Vifa2g05045 794 SUPERFAMILY Protein kinase-like (PK-like) 590 780 IPR011009 -
Vifa2g05045 794 FunFam Inactive leucine-rich repeat receptor-like protein kinase 188 284 - -
Vifa2g05045 794 Gene3D Phosphorylase Kinase; domain 1 573 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05045 Vifa-Chr2 1499783507 1499786543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05045 8 787 Receptor kinase-like Gene Family AT5G01890 43.196 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vifa2g05045 PK_Tyr_Ser-Thr 6.6e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05045 - - gmx:100791204 640.958