Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g05045 | ATGCAAGATCAATTCAGCATCATCCTTTATTTTTTTCTTGTTGTTTTTGTTCCATTCCATGTGATCTCACTATACCAACCTTTCAATGAAGATATGCTAGGGTTGATTGTGTTCAAATCAGGTCTAGAAGATCCAAAAAACAAACTTTCTTCATGGAATGAAGATGATTATAGTCCTTGCAATTGGGAAGGTGTAAAATGTGACCCTTCAACTAATAGAGTTTCTTCTCTTGTTCTTGATGGTTTCTCTCTTTCGGGCCATATCGGTAAGAGTGTTATGAAGTTGCAGTTCCTTCAAATTCTTTCACTTTCTAGGAACAACTTCACTGGCAAAATAAACCATGATCTTCTTGTTACACTTTGGAATCTAAAAGTTGTTGATTTGAGTGAAAATAGTCTCTCTGGAACAATTCCGGATGAGCTTTTTCGTCAATGTTGGTCGTTAAGAGTTTTATCATTGGCGAAAAACAATCTAACGGGTAAGATTCCCGAGTCTCTGAGCTCGTGCTACTCGTTAGCAAGTTTGAACTTTTCGTCTAATCAGTTGAATGGTGAATTAGATTCTGGAATGTGGTTTTTGAAGGAACTTCAATCGCTTGATCTATCGAATAATTTTCTTAAAGGCGAAATTCACGAAGGAGTTCAAAATCTATATGATTTGAGAGAGTTAAGGCTAGGGAGGAATTTTTTCACCGGTAGGATTCCGGAGAATATAGGAAACTGTTTGCTCTTGAAGTTGATCGATTTCAGTTATAATCTTCTAACCGATGCAATCCCGGAGTCAATACAAAGACTCACTTCATGCACATTATTGAATTTGCAAGTGAATTTTCTCAATGAAAGCATTCCTCGTTGGATCGGCGAATTGAATAATCTTGAGATATTGGATCTTTCTTCTAACACGTTTTCGGGTTCCATTCCTTCTGGAATCGGAGGTCTTACAAGTTTGCAAGTTTTGAATTTATCTACAAACAATATATTTGGTTCGATTCCGGCTAGTATAAAAGAGCTTAAATCTTTGTATGTTCTTGACTTAAGTGATAACAAGCTTAATGGAAGCATTCCTTTAGAAATAGAAGGAGCAGTTTCACTTGTTGAGTTGAAGCTTCAAAGGAATTTGTTAGGCGGAAGAATTCCACTTCAAATTGCTAAATGTTCAGCTCTAAAATCTTTGAATCTTGCACACAACAATCTTATTGGTTCAATCCCTACATCAATTGCAAACCTAACAAATCTTCAATATGCAGATTTGTCATGGAACAAACTCTCCGGAACTTTACCGAAAAAGCTCACAAATCTTACACATCTTTCCTCATTCAATGTTTCATATAACCATCTTCAAGGTGAACTTCCAATTGGTGGATTCTTCAACACAATCACTCCCTCACTTGTTCATGGAAATCCATTGTTGTGTGGTTCTGTTGTTAACCACTCATGCGACCGATCTTATCATCCTAAACCTATTGTTTTGAACCCTAATTCAAATTACAACAACTCAAGAACTTCATTACAAAACCATCATCATAAGATAATGCTTAGTATATCGGTTTTTATTGCTATTGGTGCGGCGATTTCTATTGTTGTTGGTGTTGTTGCTGTTACTCTTTTGAATATTCATGTCAGGTCTTTGGTTTCGCATTCTGGTTCTCCGTTTGGATTATCCGGTGGTGAGGATAATAGTTTTTCGCTCGAAAAAGATCCAAAATGTGGAAAACTTGTGATGCTTAATGGCGATGTTATTGAGTTTTCCGATGAGGTGAATAATCTTCTTAAAGAAGGTAATGAAATCGGCCGTGGTGGATTTGGAGTTGTTTACTGTGTTGTCCTTCGAGATCAGAATTTCGTTGCGATCAAGAAGCTTATAGGTTCGAGTTTGACGAAATCACAAGAAGATTTTGAGAGAGAAGTTCAAAAGCTTGAGGGAGTTTGCATAAGCTTCTACATGACGATGATCAAAGCAGAATTGTGTTTTCTTGGAGAGCAAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCGCTAGGATACACGGCTCCTGAGTTTGCGTGTCGCACGGTTAACATAACTGAAAAATGCGATGTATATGGTTTTGGAATTTTGATTCTAGAAATTGTGAGCGGAAAAAAGCCGGTGGAATATATGGAGGATGATGTCGTTATTCTATGTGATATGGTAAGAAGTTCATTAGAGGATGGGAAAATTGAACAATGTATCGATGAAAAACTTGTTGGTCATTTTTCACCTGAAGAAGTGATTCCTTTGATTAAATTAGGATTGGTTTGTGCGTCGCAAGTACCTTCGAGTCGTCCCAATATGGATGATGTTGTCAACATATTAGAGACGATTCAATGCTCTTCAGAAGGACAACAAGAGGAAATACAATGA | 2385 | 0.3706 | MQDQFSIILYFFLVVFVPFHVISLYQPFNEDMLGLIVFKSGLEDPKNKLSSWNEDDYSPCNWEGVKCDPSTNRVSSLVLDGFSLSGHIGKSVMKLQFLQILSLSRNNFTGKINHDLLVTLWNLKVVDLSENSLSGTIPDELFRQCWSLRVLSLAKNNLTGKIPESLSSCYSLASLNFSSNQLNGELDSGMWFLKELQSLDLSNNFLKGEIHEGVQNLYDLRELRLGRNFFTGRIPENIGNCLLLKLIDFSYNLLTDAIPESIQRLTSCTLLNLQVNFLNESIPRWIGELNNLEILDLSSNTFSGSIPSGIGGLTSLQVLNLSTNNIFGSIPASIKELKSLYVLDLSDNKLNGSIPLEIEGAVSLVELKLQRNLLGGRIPLQIAKCSALKSLNLAHNNLIGSIPTSIANLTNLQYADLSWNKLSGTLPKKLTNLTHLSSFNVSYNHLQGELPIGGFFNTITPSLVHGNPLLCGSVVNHSCDRSYHPKPIVLNPNSNYNNSRTSLQNHHHKIMLSISVFIAIGAAISIVVGVVAVTLLNIHVRSLVSHSGSPFGLSGGEDNSFSLEKDPKCGKLVMLNGDVIEFSDEVNNLLKEGNEIGRGGFGVVYCVVLRDQNFVAIKKLIGSSLTKSQEDFEREVQKLEGVCISFYMTMIKAELCFLGEQDHCVLSSKIQSALGYTAPEFACRTVNITEKCDVYGFGILILEIVSGKKPVEYMEDDVVILCDMVRSSLEDGKIEQCIDEKLVGHFSPEEVIPLIKLGLVCASQVPSSRPNMDDVVNILETIQCSSEGQQEEIQ | 794 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g05045 | 794 | SUPERFAMILY | L domain-like | 51 | 279 | - | - | |
Vifa2g05045 | 794 | Pfam | Leucine Rich Repeat | 388 | 409 | IPR001611 | GO:0005515 | |
Vifa2g05045 | 794 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 83 | 779 | - | - | |
Vifa2g05045 | 794 | Gene3D | Ribonuclease Inhibitor | 28 | 191 | IPR032675 | - | |
Vifa2g05045 | 794 | Pfam | Leucine rich repeat N-terminal domain | 29 | 68 | IPR013210 | - | |
Vifa2g05045 | 794 | PRINTS | Leucine-rich repeat signature | 123 | 136 | - | - | |
Vifa2g05045 | 794 | PRINTS | Leucine-rich repeat signature | 337 | 350 | - | - | |
Vifa2g05045 | 794 | ProSitePatterns | Protein kinases ATP-binding region signature. | 596 | 619 | IPR017441 | GO:0005524 | |
Vifa2g05045 | 794 | SUPERFAMILY | L domain-like | 215 | 472 | - | - | |
Vifa2g05045 | 794 | Gene3D | Transferase(Phosphotransferase) domain 1 | 649 | 794 | - | - | |
Vifa2g05045 | 794 | FunFam | Leucine-rich repeat receptor-like protein kinase | 28 | 187 | - | - | |
Vifa2g05045 | 794 | SMART | LRR_typ_2 | 120 | 144 | IPR003591 | - | |
Vifa2g05045 | 794 | SMART | LRR_typ_2 | 289 | 312 | IPR003591 | - | |
Vifa2g05045 | 794 | SMART | LRR_typ_2 | 433 | 457 | IPR003591 | - | |
Vifa2g05045 | 794 | SMART | LRR_typ_2 | 337 | 361 | IPR003591 | - | |
Vifa2g05045 | 794 | SMART | LRR_typ_2 | 313 | 336 | IPR003591 | - | |
Vifa2g05045 | 794 | SMART | LRR_typ_2 | 193 | 216 | IPR003591 | - | |
Vifa2g05045 | 794 | SMART | LRR_typ_2 | 217 | 241 | IPR003591 | - | |
Vifa2g05045 | 794 | FunFam | Leucine-rich repeat receptor-like protein kinase PXC2 | 288 | 482 | - | - | |
Vifa2g05045 | 794 | SMART | LRR_sd22_2 | 193 | 216 | - | - | |
Vifa2g05045 | 794 | SMART | LRR_sd22_2 | 409 | 435 | - | - | |
Vifa2g05045 | 794 | SMART | LRR_sd22_2 | 289 | 315 | - | - | |
Vifa2g05045 | 794 | SMART | LRR_sd22_2 | 337 | 358 | - | - | |
Vifa2g05045 | 794 | Pfam | Protein tyrosine and serine/threonine kinase | 665 | 720 | IPR001245 | GO:0004672|GO:0006468 | |
Vifa2g05045 | 794 | Gene3D | Ribonuclease Inhibitor | 192 | 482 | IPR032675 | - | |
Vifa2g05045 | 794 | Pfam | Leucine rich repeat | 271 | 326 | IPR001611 | GO:0005515 | |
Vifa2g05045 | 794 | Pfam | Leucine rich repeat | 122 | 182 | IPR001611 | GO:0005515 | |
Vifa2g05045 | 794 | SUPERFAMILY | Protein kinase-like (PK-like) | 590 | 780 | IPR011009 | - | |
Vifa2g05045 | 794 | FunFam | Inactive leucine-rich repeat receptor-like protein kinase | 188 | 284 | - | - | |
Vifa2g05045 | 794 | Gene3D | Phosphorylase Kinase; domain 1 | 573 | 644 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g05045 | Vifa-Chr2 | 1499783507 | 1499786543 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g05045 | 8 | 787 | Receptor kinase-like Gene Family | AT5G01890 | 43.196 | 0.0 | 640 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VII-1 | Vifa2g05045 | PK_Tyr_Ser-Thr | 6.6e-06 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g05045 | - | - | gmx:100791204 | 640.958 |