Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05044 ATGGAGTCAAAGTGCTGCATGAATGTTTTGTGTGGTGCCTCCACGTCGATTCGGTGGTGGAAAGGTTGGATACTTCGATCCGGTGAATTCGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGAGAAATCAGAGTTTTGTGATGTGTTCCATGCGAAAGATTCTGGTTGGAGAGAGTGCACCTCATGTGGCAAGCGTCTCCACTGTGGATGCGTTGCTTCAAGGTCTCAGGTTGAAATACTGGATACTAGTGGTGTAAGCTGTATAACCTGTGCAAGTAATTTAGGCCTTCAACCTATTGCTAGTAATGAAAAGCCTAATGAATCTGGAACAGCAAAGTTAAAACATGTCAGTGCGCAGCAGTGCATATCTCTGGCTGACCAATTAAATGTGAAGGATACACAAGTTAGGAATTATGCAGAAAATGACAGCCTGAGGTGCTGGCTCAAACCTCACAATATTGATATGGATGGGCCTTCTACAGAAATCAAACCAGAAGTTTTACATTCTGTTGGAGAATTTGGTAACACTTCGATGTCTCAATTTCATCTCGAGTCAAATGGATCATCTAGGACAGCCAATGTAGAGAACTGTAAGGCAGACAGTATGCAAGGTATATATGAATCACTGGCACAGACAAATTTGAGTATGACCCTTGCTGCCCCTTTGTTAAATTTGAATCCCTTTCATAATGCCCTTGTTGATGAAAGGGAACAAAGAAAAATGTCACCTCCACTTCTATTGGCGTCTAGATCTCGCCATCTTTTACCTAGACCCCCTAGGCCAACTCTCTCTCCAGGCTTAGAAGGTAATGCAGGCACGGTGTCCCAGATTCGAATAGCAAGGCCTCCTGCTGAAGGACGAGGAAGGAGTCAGTTGCTTCCACGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATCCAAATTCCACCATTGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATATCTCAACCTGAGGGCCTTCCTCTTCGAATCCAAGATGTGAAAGGAAAAGAGTGGATGTTTCAATTTAGATTTTGGCCAAATAACAACAGTAGGATGTATGTTTTAGAAGGCGTAACCCCCTGCATTCAGTCTATGCAACTGCAAGCTGGTGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACGAATTCTGCTTCATTACAGGAAACTTTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGGGTTTATGAGAATATACCTATATTAAGTGGTTACCGTGGCCTTCTTCAGTCTCAAAAAGGATGCTCAGAAACCCACTTAAATGTGTTGTCTAAAAAGTGGAACTCAGTTGGTGGTGACATGGATTGGCATAATGTAGAAACACCCGAAAGCAGGAAAAGAGATGCGTTGTCTTTGCCACCCGTGCTGGTTCCCGAGAAGAAAAGAACCAGGAATATTGGGTCAAAAAGTAAGAGGCTGCTTATTGATAGCCAGGATGCGCTGGAGCTGAAACTTACTTGGGAAGAGGCCCAGGATTTACTTCGTCCGCCGCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACATATTTGAAGAATATGAAGAGCCTCCTGTCTTTGGAAAGAAGAGTATATTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGGCACAATGTGATAGTTGCTTAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCTCTAAGTGGACATGTATGGAAAATTTTTGGGATCAAAGCAGGTGTTCGTGTGCTTCTCCCAATGAATTGAACCCAAGGGAACTGGATAATCTTTTAAGAATGAACAAGGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTCTGGAACATGAATCTTCTGGTCTTGATTCTTTGGCCAATGCTGCAGTACTTGGAGATGCTGCAAGTGACTCTGGCATGACACCAGTCGTGACCACTACAAAACACCCCCGTCACAGACCTGGATGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTTTATGCACCTGTAATGTGTGCTTGACAGTTAAACGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAGCGTCAATCTGAGCGTGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATGGAGAACCAATGATGAATCAGAAGTAGACAGCACCACTCGACATTTAACTCCAGTTGATGGTTCGGAGAATGAAGCAAGGGTGCCAAATGAGTTAAGCTCAAGAAGTCAAGACCAAGTGGCTGAAGCTGCTAAGGGACAATTAGACTTGAACTCCCAACCGGACCGGGAAGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTTTTGAAGAAGCGAATCTCCCATTAGAGACATACCTGAAGCAAAATGGTCTCTCTAGCTTGATATCAGATCAGCAAGCAAACTCAGCTTCAAATGTGCAGCCACAGACAACCACTGAGAGTGAGGGAAGACAAAATGAAGATTGCTGTACTGCTTCTGCAGTTCACGAACAGGTAGGCAGTCCTGAGGAAAACAGTGAGCACGACAGAGACCAAAACAATTCAGTTTCATGA 2724 0.4416 MESKCCMNVLCGASTSIRWWKGWILRSGEFADLCDKCGSAYEKSEFCDVFHAKDSGWRECTSCGKRLHCGCVASRSQVEILDTSGVSCITCASNLGLQPIASNEKPNESGTAKLKHVSAQQCISLADQLNVKDTQVRNYAENDSLRCWLKPHNIDMDGPSTEIKPEVLHSVGEFGNTSMSQFHLESNGSSRTANVENCKADSMQGIYESLAQTNLSMTLAAPLLNLNPFHNALVDEREQRKMSPPLLLASRSRHLLPRPPRPTLSPGLEGNAGTVSQIRIARPPAEGRGRSQLLPRYWPRITDQELQQISGDPNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASLQETFPSNMPNGSHSSETSYSGVYENIPILSGYRGLLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVETPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHIFEEYEEPPVFGKKSIFVVRSNGINEQWAQCDSCLKWRKLPVDVLIPSKWTCMENFWDQSRCSCASPNELNPRELDNLLRMNKEFKKQRLAAASQRPALEHESSGLDSLANAAVLGDAASDSGMTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPLCTCNVCLTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSWRTNDESEVDSTTRHLTPVDGSENEARVPNELSSRSQDQVAEAAKGQLDLNSQPDREDMQAGPNTLSMMTLFEEANLPLETYLKQNGLSSLISDQQANSASNVQPQTTTESEGRQNEDCCTASAVHEQVGSPEENSEHDRDQNNSVS 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05044 907 Pfam CW-type Zinc Finger 591 633 IPR011124 GO:0008270
Vifa2g05044 907 ProSiteProfiles Zinc finger CW-type profile. 586 636 IPR011124 GO:0008270
Vifa2g05044 907 SMART B3_2 321 421 IPR003340 GO:0003677
Vifa2g05044 907 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Vifa2g05044 907 MobiDBLite consensus disorder prediction 854 907 - -
Vifa2g05044 907 MobiDBLite consensus disorder prediction 740 822 - -
Vifa2g05044 907 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 859 - -
Vifa2g05044 907 CDD B3_DNA 319 420 IPR003340 GO:0003677
Vifa2g05044 907 Gene3D - 299 426 IPR015300 -
Vifa2g05044 907 MobiDBLite consensus disorder prediction 787 801 - -
Vifa2g05044 907 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Vifa2g05044 907 SUPERFAMILY DNA-binding pseudobarrel domain 318 420 IPR015300 -
Vifa2g05044 907 MobiDBLite consensus disorder prediction 854 882 - -
Vifa2g05044 907 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Vifa2g05044 907 Gene3D - 589 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05044 Vifa-Chr2 1499054793 1499062022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05044 1 889 B3 DNA Binding Superfamily AT4G32010 48.767 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g05044 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05044 K09287 - gmx:100778833 1514.59