Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05043 ATGGGATGTTTAACTGTCATCAAGAACATGAAGAAGAAGTATGAAAGGTCCAAATCACAAATCGGAAGTCGTAATGAGAAGGTATCTACAGCAATGCCTCAACTTCAAGCTTCTCGCTCATTACACTTCAATCCTCAAAATCCTAAGACTAGCGTGAAATCTGCTAACCCGATTAACCGAGTTACCTACAACAGAACAAGAGCTTTATCCGCTCCATCAGCTCTTGAAGCTGCAGAACAAGAAGCGCTGGCCTCAATTGAGCAAGAGGAACAAGAAATGTCGAAAACTCTAGCGAGATTAATGAAGGAGCCTCGTGTACCTAGTCCAGTACCTAGTCCACTACCCTTACCTCTTCCATCTCCTCGAAGTAGGGGTCCATTGAAGTTAAGGATGACTAGTGATCCTTTCTATGCTTCTGGCTCAGGTATTGATACAGCAGAACAAGATGGCTTTGAAACATTTCAGTATGATGCGCGAGAATGGTCTAAAAACCGAGACAGATCTATGAAGAAACAGCATCTAGCTAGACCACTACCTTTACCGCCTAAAGGAAGATTTCCATCGAAGGCTACTAGCAGCTATAAGTCAGGAGCAGTTTCTGATTCGGTTCGTTTCTTTCTGTACGAGGAAATTGTCGCTGCTTGTCACAATTTCCGTTCGGATAGATGCTTGGCAGAATGTTTTTCTTCCACCGTATATAAAGCTTCCTTTTTTCATGAAGCTTCGTGTAAGAAGCTTAAAGCCACTGTCACGCGCCTTCACCCATCAACTCAGGGCTTGAGAGAATTCATGAATGAGGTTAGTAGTCTTGCAAAAATGCAACATCCGAACATCTGTAAATTGCTCGGATTTTATGCATGCGATACCTCTGAAACAAGAATGTTGGTTTACGAGAGGCTAAGCAATGGGAGCTTGGACAACCTGTTGTTCAGGAGACCTGACGGCCCTTCGATTGATTGGAACACAAGAATGAAAATCGCCTTCTCTGCTGCACAAGGTCTTACTTTCTTGCATGATGAAGGGCCTTCTAAGGTAATGTATAATGATTTTTCAGCCGTGAATATACAGATTGATATAGATTTCAATGCAAAGCTTTCGGGATATGGTTTTGTTGGACATATTGTAGAGGATGCATTTTCAAGAAGTTCAGCTGCGGCTGGAAATCTTTCTGTGGAGACATGGAGAAGAGGAAAGCTTACTCCAAAGAGCAATGTATGGGGTTTTGGAATTGTTCTTCTGGAGCTACTCACAGGAAGAAAGAATTTTGACATGAATCTCCCCAAGAGAGAGAGGAACTTAGTCAGATGGTGTCAACCTTTCTTAACCGACAACTTATTTGTGATCATGGATTCTCAACTTGAAGGTCGGTTTCCACCCAAAGCAGCAAGAATAGTAGCTGACATTGCGCAAAGATGCCTCCAAAAGGAAGCATCAGAAAGACCATCCATGAGAGTCATTGTTGAGAATCTCAAAATCTTACTAGATATGCAGTACCCTTGTTGGTTCCCACTGCACGAGCCGGCCGCTGTGTACAGAAGACAAATGGCAAAATCACTAAGTGTTGATGGTATCAGTTATGGACCTAGTTTGGGTTTCTCTCCTCCGTGCCTACCATCAATCGAAACATCTATTTCACATCCTCCAAGATGGTCTTCTGTTCCCGTAGCGCTTCCTCCTCCTCTTCTTCGTTCCTCCAATGTCATTACTGAGGAGATCATTAAGGAGGAAAGTACAAAGCAATCATCTTCAGTATCAGAGAAAGCTTAG 1767 0.4295 MGCLTVIKNMKKKYERSKSQIGSRNEKVSTAMPQLQASRSLHFNPQNPKTSVKSANPINRVTYNRTRALSAPSALEAAEQEALASIEQEEQEMSKTLARLMKEPRVPSPVPSPLPLPLPSPRSRGPLKLRMTSDPFYASGSGIDTAEQDGFETFQYDAREWSKNRDRSMKKQHLARPLPLPPKGRFPSKATSSYKSGAVSDSVRFFLYEEIVAACHNFRSDRCLAECFSSTVYKASFFHEASCKKLKATVTRLHPSTQGLREFMNEVSSLAKMQHPNICKLLGFYACDTSETRMLVYERLSNGSLDNLLFRRPDGPSIDWNTRMKIAFSAAQGLTFLHDEGPSKVMYNDFSAVNIQIDIDFNAKLSGYGFVGHIVEDAFSRSSAAAGNLSVETWRRGKLTPKSNVWGFGIVLLELLTGRKNFDMNLPKRERNLVRWCQPFLTDNLFVIMDSQLEGRFPPKAARIVADIAQRCLQKEASERPSMRVIVENLKILLDMQYPCWFPLHEPAAVYRRQMAKSLSVDGISYGPSLGFSPPCLPSIETSISHPPRWSSVPVALPPPLLRSSNVITEEIIKEESTKQSSSVSEKA 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05043 588 Pfam Protein tyrosine and serine/threonine kinase 222 490 IPR001245 GO:0004672|GO:0006468
Vifa2g05043 588 MobiDBLite consensus disorder prediction 14 33 - -
Vifa2g05043 588 MobiDBLite consensus disorder prediction 38 57 - -
Vifa2g05043 588 MobiDBLite consensus disorder prediction 165 191 - -
Vifa2g05043 588 Gene3D Phosphorylase Kinase; domain 1 186 298 - -
Vifa2g05043 588 Gene3D Transferase(Phosphotransferase) domain 1 300 498 - -
Vifa2g05043 588 Coils Coil 83 103 - -
Vifa2g05043 588 ProSiteProfiles Protein kinase domain profile. 218 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05043 588 PANTHER OS01G0588500 PROTEIN-RELATED 164 491 - -
Vifa2g05043 588 SUPERFAMILY Protein kinase-like (PK-like) 199 503 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05043 Vifa-Chr2 1499047360 1499049841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05043 206 493 Glycoside Hydrolase AT3G07070 38.983 1.60e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Vifa2g05043 PK_Tyr_Ser-Thr 6.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05043 - - aprc:113849641 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05043 2 1499047360 1499049841 Vifa2g05043 2 1499047360 1499049841 PCT