Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05028 ATGCAGTTTAACAATTTGTCTGGGTCTTTGCCTGAATTTTCAGCTTGGAAGAATCTTACTGTTGTTAATTTGTCTAGTAATAGGTTCAATGGGAGTATTCCTGTTTCGCTTTCGAATTTGACTCAGCTTTCGGGTTTGAACCTTGCGAGTAATGATCTTTCTGGTGATATTCCTGATCTGAATTTGTCGAGGTTGCAGACGCTGAATTTGTCTAACAATGATTTACATGGCACTGTGCCGAGATCGTTAAGGAGGTTTCCTGATTCAGCGTTTGTTGGGAATAATGTAACTCTTGGAAATTATACTGTTGTTCCGCCCGTGCCTTCGCCGGTTTATGATGCGTCTTCGACCTCGGGGAAATGTGGGAAGCTAAGTGAAGCGGCGGTGCTTGGAATTGTTGTTGTTGGGAGGTTTCTTGGGCTTGTAGCTTTTGGAAAAATGTCTCCGGAGAAAGCAGTTTCGAGGAACATGGATGCTAATAATAAACTGACTTTCTTCGAGGGATGTAATTATGCGTTTGATTTAGAAGACTTGTTAAGAGCTTCCGCCGAGATTCTAGGAAAGGGAACGTTTGGTACTGCTTACAAGGCGATTCTTGAGGATGCGACTGCGGTTGTTGTGAAGAGATTGAAGGAGGTAGCCTATGGAAAGAAGGATTTTGAGCAATACATGGAGATTGTTGGAAGTCTTAAACATGAGAATATGGTTGAGCTGAAAGCTTATTATTATTCGAAAGACGAGAAACTGATGGTATATGATTACTACAGTCAGGGGAGTGTTTCTTCTTTGTTGCATGGGAAAAGAGGAGAAGACAAGGTGCCTTTAGATTGGAATACTCGGTTGAGAATCGCTTTAGGTGCAGCAAGAGGCATTGCTCACATCCATGTTGAGAATAGCGGAAAAGTGGTACACGGAAACATCAAGTCTTCAAATATCTTTCTCAATACTAAGCAATACGGTTGTGTATCTGATCTTGGTCTGGAATCCATTTCAACCTCGCTCGCCCTACCCATCTCACGAGCAGCTGGTTACCGAGCACCAGAAGTTACAGACACTAGGAAAGCAGCACAACCTTCAGATGTTTACAGCTTCGGCGTCGTGTTACTAGAGCTTCTAACCGGGAAATCACCTATCCACACAGCTGGTGGTGATGAGTTTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTGCGAGAGGAGTGGACGGCTGAAGTATTTGACTTAGAGTTGATGAGATATCCAAATATAGAAGAAGAGATGGTTGAGATGTTGCAGATAGCCATGTCTTGTGTGGTAAGAATGCCGGATCAGAGACCTAAGATGTCCGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATAATGCACAGATATCATCTGAGAACCAAGCTGAAGTTAGATTATCATCTCAAAGCGAGACCGATAACGACAACATTAACTCCACTTCTTCTCCTTTACCGAAAGGAAGTGAATGA 1479 0.4293 MQFNNLSGSLPEFSAWKNLTVVNLSSNRFNGSIPVSLSNLTQLSGLNLASNDLSGDIPDLNLSRLQTLNLSNNDLHGTVPRSLRRFPDSAFVGNNVTLGNYTVVPPVPSPVYDASSTSGKCGKLSEAAVLGIVVVGRFLGLVAFGKMSPEKAVSRNMDANNKLTFFEGCNYAFDLEDLLRASAEILGKGTFGTAYKAILEDATAVVVKRLKEVAYGKKDFEQYMEIVGSLKHENMVELKAYYYSKDEKLMVYDYYSQGSVSSLLHGKRGEDKVPLDWNTRLRIALGAARGIAHIHVENSGKVVHGNIKSSNIFLNTKQYGCVSDLGLESISTSLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTAGGDEFVHLVRWVHSVVREEWTAEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRQIDNAQISSENQAEVRLSSQSETDNDNINSTSSPLPKGSE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05028 492 Pfam Protein kinase domain 183 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05028 492 ProSiteProfiles Protein kinase domain profile. 180 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05028 492 ProSitePatterns Protein kinases ATP-binding region signature. 186 208 IPR017441 GO:0005524
Vifa2g05028 492 SUPERFAMILY Protein kinase-like (PK-like) 184 449 IPR011009 -
Vifa2g05028 492 FunFam pollen receptor-like kinase 1 149 254 - -
Vifa2g05028 492 PANTHER OS05G0588300 PROTEIN 2 462 - -
Vifa2g05028 492 Gene3D Ribonuclease Inhibitor 1 103 IPR032675 -
Vifa2g05028 492 Gene3D Phosphorylase Kinase; domain 1 146 254 - -
Vifa2g05028 492 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 255 462 - -
Vifa2g05028 492 MobiDBLite consensus disorder prediction 462 492 - -
Vifa2g05028 492 Gene3D Transferase(Phosphotransferase) domain 1 256 478 - -
Vifa2g05028 492 SUPERFAMILY L domain-like 3 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05028 Vifa-Chr2 1494845197 1494846866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05028 1 473 Receptor kinase-like Gene Family AT4G23740 64.300 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g05028 Pkinase 6.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05028 - - gmx:100804799 764.222