Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05027 ATGTTTAAAGGAAGAATAGGAGGCAAAGCTCAGCTTGGATATGTTGAAACTGATCCTTCGGGTCGATATGGACGTTTTAAAGATGTCCTTGGCAAAGGAGCTATGAAGATCAACTTCAACGGCTCTATTCAGAAAACCTTCAATTTCATCACTGAATTGTTCACTTCTGGAACTCTAAGAGAGTATAGAAAGAAATATCCTCGTGTAGATATCAGAGCAATAAAGAATTGGGCTCGTCAAATTCTAAGTGGTTTGGAGTATTTACACAGCCATGATCCACCTGTAATACATAGAGACCTAAAATGTGACAATATCTTTGTCAATGGCCATATGGGAAAGGTCAAGATTGGTGATTTAGGCCTTGCAGCAATTCTTCGTGGTTCTCAACATGCACATAGTGTCATAGGTACACCTGAATTTATGGCACCAGAATTGTATGAAGAGGAATACAATGAGTTGGTAGACATATACTCATTTGGCATGTGCATGATTGAGTTATTCACTTCAGAATTTCCATATAGTGAATGCACCAACCCTGCTCAAATATACAAAAAAGTTACCTCAGGGAAGCTACCAGAGGCATTTTACAAGATTCAAGATGTAGAAGCCCAAAAGTTTGTTGGGAAGTGTTTGGCAAATGTCTCAGAAAGATTGTCAGCAAAAGAGCTTTTGTTGGATCCATTTTTGGCTACGGCCCAACATGAGTCACCATTGCTTAGTCCAACTTCAATTCAAAAAAGCAATTTCAATGCAATAATTGCCAAACAGGAACTTTTATTAAATGATCAAAGAAAGAACACATTCATGACAATCACAGGGAGTATGAATGAAAAGGATGATACTGTTTTTCTTAAAGTCAAAATTTCTAACAAAGAAGGGCACACAAGAAACATATACTTCCCATATGACACCATGAAGGACACTGCAATTGAAGTTGCAAATGAAATGGTAAAAGAATTAGAAATTATTGACTTGGAACCATTGGAGATTGCTGATATGATTGAAGAAGAGATTTCAACTATAGTTCCAACATGGAGGGATTGTAACAATTCTAAGTATGCAAAACAACATAGTTTTAACTATGGTGAAGAAGATGATAATCGTCATCCTTTCTTCTCGCCGCCGCCTTCTCGATCATCTTCTCATGTTTCTCTCCCTATGTTTTGTGCTTCCTTCAATAACCATGCAAGCCTTTGTGGGAACCATTATTCTCTTGCTCAAGATTGGTTACAAGATGATCATCAATTTATGAATGATGATGCAAGCTCAGAAACCTCAATGAACTCCTTCAAGTGTTTCAATTTCCATTGTGACGATTCATGCAACGAAGACGAAGACGATTCAACTCTCATAGTAGGAGAAGAATCCTTTTGTTGCAATCCAGAAAGTAACAACAAATGGACAAGATTTTGTCCTCCAAAAGAGATGGTGGAAGCTGGTATCACCAAACAGTTATGCAACATGAAAATGAATTCTCAAATTCACAATCATAGGAATCATCATGGAACAAAGAACAGATGCAAGAGACTAACAAGGATTAATTCATGTGTTGATGTGAGGAGGCAACAATTGCAACGATCTTTGATGGAAGAGATGCAAAAGAGAAGGATGTTCAACACGGTTGATGCTATTGAGAATGTTGGGTTTCAAAATCCAGAAGGATATGGATGTTTCTCATGTTGA 1683 0.3749 MFKGRIGGKAQLGYVETDPSGRYGRFKDVLGKGAMKINFNGSIQKTFNFITELFTSGTLREYRKKYPRVDIRAIKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFVNGHMGKVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIELFTSEFPYSECTNPAQIYKKVTSGKLPEAFYKIQDVEAQKFVGKCLANVSERLSAKELLLDPFLATAQHESPLLSPTSIQKSNFNAIIAKQELLLNDQRKNTFMTITGSMNEKDDTVFLKVKISNKEGHTRNIYFPYDTMKDTAIEVANEMVKELEIIDLEPLEIADMIEEEISTIVPTWRDCNNSKYAKQHSFNYGEEDDNRHPFFSPPPSRSSSHVSLPMFCASFNNHASLCGNHYSLAQDWLQDDHQFMNDDASSETSMNSFKCFNFHCDDSCNEDEDDSTLIVGEESFCCNPESNNKWTRFCPPKEMVEAGITKQLCNMKMNSQIHNHRNHHGTKNRCKRLTRINSCVDVRRQQLQRSLMEEMQKRRMFNTVDAIENVGFQNPEGYGCFSC 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05027 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 95 107 IPR008271 GO:0004672|GO:0006468
Vifa2g05027 560 FunFam probable serine/threonine-protein kinase WNK9 54 234 - -
Vifa2g05027 560 SMART serkin_6 24 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05027 560 Pfam Protein kinase domain 44 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05027 560 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05027 560 SUPERFAMILY Protein kinase-like (PK-like) 45 230 IPR011009 -
Vifa2g05027 560 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 44 531 - -
Vifa2g05027 560 Gene3D Transferase(Phosphotransferase) domain 1 54 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05027 Vifa-Chr2 1493416040 1493432338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05027 12 367 MAP Kinase Kinase Kinase AT3G51630 57.729 1.14e-159 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa2g05027 Pkinase 8.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05027 K08867 - gmx:100816187 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01295 5 376591933 376594115 Vifa2g05027 2 1493416040 1493432338 PCT