LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g05027	ATGTTTAAAGGAAGAATAGGAGGCAAAGCTCAGCTTGGATATGTTGAAACTGATCCTTCGGGTCGATATGGACGTTTTAAAGATGTCCTTGGCAAAGGAGCTATGAAGATCAACTTCAACGGCTCTATTCAGAAAACCTTCAATTTCATCACTGAATTGTTCACTTCTGGAACTCTAAGAGAGTATAGAAAGAAATATCCTCGTGTAGATATCAGAGCAATAAAGAATTGGGCTCGTCAAATTCTAAGTGGTTTGGAGTATTTACACAGCCATGATCCACCTGTAATACATAGAGACCTAAAATGTGACAATATCTTTGTCAATGGCCATATGGGAAAGGTCAAGATTGGTGATTTAGGCCTTGCAGCAATTCTTCGTGGTTCTCAACATGCACATAGTGTCATAGGTACACCTGAATTTATGGCACCAGAATTGTATGAAGAGGAATACAATGAGTTGGTAGACATATACTCATTTGGCATGTGCATGATTGAGTTATTCACTTCAGAATTTCCATATAGTGAATGCACCAACCCTGCTCAAATATACAAAAAAGTTACCTCAGGGAAGCTACCAGAGGCATTTTACAAGATTCAAGATGTAGAAGCCCAAAAGTTTGTTGGGAAGTGTTTGGCAAATGTCTCAGAAAGATTGTCAGCAAAAGAGCTTTTGTTGGATCCATTTTTGGCTACGGCCCAACATGAGTCACCATTGCTTAGTCCAACTTCAATTCAAAAAAGCAATTTCAATGCAATAATTGCCAAACAGGAACTTTTATTAAATGATCAAAGAAAGAACACATTCATGACAATCACAGGGAGTATGAATGAAAAGGATGATACTGTTTTTCTTAAAGTCAAAATTTCTAACAAAGAAGGGCACACAAGAAACATATACTTCCCATATGACACCATGAAGGACACTGCAATTGAAGTTGCAAATGAAATGGTAAAAGAATTAGAAATTATTGACTTGGAACCATTGGAGATTGCTGATATGATTGAAGAAGAGATTTCAACTATAGTTCCAACATGGAGGGATTGTAACAATTCTAAGTATGCAAAACAACATAGTTTTAACTATGGTGAAGAAGATGATAATCGTCATCCTTTCTTCTCGCCGCCGCCTTCTCGATCATCTTCTCATGTTTCTCTCCCTATGTTTTGTGCTTCCTTCAATAACCATGCAAGCCTTTGTGGGAACCATTATTCTCTTGCTCAAGATTGGTTACAAGATGATCATCAATTTATGAATGATGATGCAAGCTCAGAAACCTCAATGAACTCCTTCAAGTGTTTCAATTTCCATTGTGACGATTCATGCAACGAAGACGAAGACGATTCAACTCTCATAGTAGGAGAAGAATCCTTTTGTTGCAATCCAGAAAGTAACAACAAATGGACAAGATTTTGTCCTCCAAAAGAGATGGTGGAAGCTGGTATCACCAAACAGTTATGCAACATGAAAATGAATTCTCAAATTCACAATCATAGGAATCATCATGGAACAAAGAACAGATGCAAGAGACTAACAAGGATTAATTCATGTGTTGATGTGAGGAGGCAACAATTGCAACGATCTTTGATGGAAGAGATGCAAAAGAGAAGGATGTTCAACACGGTTGATGCTATTGAGAATGTTGGGTTTCAAAATCCAGAAGGATATGGATGTTTCTCATGTTGA	1683	0.3749	MFKGRIGGKAQLGYVETDPSGRYGRFKDVLGKGAMKINFNGSIQKTFNFITELFTSGTLREYRKKYPRVDIRAIKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFVNGHMGKVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIELFTSEFPYSECTNPAQIYKKVTSGKLPEAFYKIQDVEAQKFVGKCLANVSERLSAKELLLDPFLATAQHESPLLSPTSIQKSNFNAIIAKQELLLNDQRKNTFMTITGSMNEKDDTVFLKVKISNKEGHTRNIYFPYDTMKDTAIEVANEMVKELEIIDLEPLEIADMIEEEISTIVPTWRDCNNSKYAKQHSFNYGEEDDNRHPFFSPPPSRSSSHVSLPMFCASFNNHASLCGNHYSLAQDWLQDDHQFMNDDASSETSMNSFKCFNFHCDDSCNEDEDDSTLIVGEESFCCNPESNNKWTRFCPPKEMVEAGITKQLCNMKMNSQIHNHRNHHGTKNRCKRLTRINSCVDVRRQQLQRSLMEEMQKRRMFNTVDAIENVGFQNPEGYGCFSC	560

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa2g05027	560	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	95	107	IPR008271	GO:0004672\|GO:0006468
Vifa2g05027	560	FunFam	probable serine/threonine-protein kinase WNK9	54	234	-	-
Vifa2g05027	560	SMART	serkin_6	24	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa2g05027	560	Pfam	Protein kinase domain	44	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa2g05027	560	ProSiteProfiles	Protein kinase domain profile.	1	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa2g05027	560	SUPERFAMILY	Protein kinase-like (PK-like)	45	230	IPR011009	-
Vifa2g05027	560	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	44	531	-	-
Vifa2g05027	560	Gene3D	Transferase(Phosphotransferase) domain 1	54	235	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g05027	Vifa-Chr2	1493416040	1493432338	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g05027	12	367	MAP Kinase Kinase Kinase	AT3G51630	57.729	1.14e-159	465

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Vifa2g05027		Pkinase	8.6e-37	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g05027	K08867		-	gmx:100816187	746.888

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa5g01295	5	376591933	376594115	Vifa2g05027	2	1493416040	1493432338	PCT

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