Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05024 ATGACGGCGTCGTTTTTAGTCAACAAGTTGAAGTTGACTAACGGTTCTATGGAAGATACAAACGGCGTCGTTTATGAGCTTCGGGTGTTAGCGAAAACTGATTCAGAGAGCCGAGCCTGTATAGCCGAAGCTGGAGCTATAAAACTTTTGGTTCGGTTTTTAAGTTATGAAGTTGGTTCGAACAACCCGAGCCTACAAGTTAACGCCGTGACAACGATTTTAAATCTTTCTATACTTGAAGCGAATAAGACAAGGATAATGGAAAATGACGGGGCGTTAAATGGGATAACAGAGGTTTTACGAGCAGGTGCCACGTGGGAGGCGAAATCGAATGCTGCAGCGACGGTGTTTAGTTTAACGGGAGTTGTTGGTTTTAGAAAACGGTTAGGGAGGAAGACACGTGTCGTTAGTGGATTGGTTGAGTTAGCGAAAAGTGGGCCTGAGGGAGCAAAGAGAGACGCGCTGGCGGCGATTTTGAATTTGGCGTCGGATCGTGAGACTGTGGCAAGGTTAGTTGAGAGTGGAGCGGTTCAAATGACGGCGGAGATTATGGCGGGGATGCCGGAGGAGGCTGTGACGATACTTGAAGCGGTGGTTAAGCGGGGAGGATTGGTGGCGGTGGCGGCGGCTTTTATGGGGATAAAGAAATTGGGTAAGGTGTTGAGGGAGGGATCGGAGAGGGCAAGAGAGAGTGCGGCGGCTACGCTTGTGACGATGTGTAGGAAAGGTGGGTCGGAGATTGTGACGGAGCTTGCGGCGATTGATGGTGTGGAGAGGGTGATTTGGGAGTTGATGGCGGTGGGGAGTGTAAGAGGGAGGAGGAAGGCGGCTACGTTGTTGAGGATTTTACGGCGGTGGGCGGCTGGTTTGGACGGTGGTGAAACGGAAGGGTTTTCAACAAACAACAGTTCTGTTAGTGCGTCAACTAGCGTGGTTGTTTCAACTACCACTTCATTGGTACAATAG 966 0.5021 MTASFLVNKLKLTNGSMEDTNGVVYELRVLAKTDSESRACIAEAGAIKLLVRFLSYEVGSNNPSLQVNAVTTILNLSILEANKTRIMENDGALNGITEVLRAGATWEAKSNAAATVFSLTGVVGFRKRLGRKTRVVSGLVELAKSGPEGAKRDALAAILNLASDRETVARLVESGAVQMTAEIMAGMPEEAVTILEAVVKRGGLVAVAAAFMGIKKLGKVLREGSERARESAAATLVTMCRKGGSEIVTELAAIDGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFSTNNSSVSASTSVVVSTTTSLVQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05024 321 SUPERFAMILY ARM repeat 14 283 IPR016024 -
Vifa2g05024 321 Pfam Armadillo/beta-catenin-like repeat 34 77 IPR000225 GO:0005515
Vifa2g05024 321 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 45 91 IPR000225 GO:0005515
Vifa2g05024 321 PANTHER U BOX DOMAIN-CONTAINING 4 284 - -
Vifa2g05024 321 SMART arm_5 34 78 IPR000225 GO:0005515
Vifa2g05024 321 Gene3D - 4 212 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05024 Vifa-Chr2 1491870707 1491871672 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05024 1 319 U-box Gene Family AT5G01830 61.755 8.60e-122 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05024 - - tpra:123922727 481.1