Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05018 ATGTCCTCCAAAATATATTTCTCAATGTTCATCCACACATTAGTATTTGCAACTCTTGCAACCGCAACATTTTCACTAACACCAAATTATTATGACTATACTTGTCCCAACGCTTTGAGCACCATTAAAAGTGTTGTGAAAGGCGCAGTTCAAAAAGAATACCGTATGGGTGCTTCTTTACTACGCTTGCACTTTCATGATTGCTTTGTTAATGGTTGCGACGGTTCGATTCTTCTAGACTCTACACCTTCGATGGATAGTGAAAAAAATGCAAATCCAAATATCAACTCAGCTAGAGGATTTGAAGTAATAGATGAGATCAAACAAGCTGTTGATGAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGATATATTGACTATAGCCGCTAGAGACTCCGTCGTCGCGTTAGGAGGACCATCATGGAAAGTGAAACTAGGAAGAAGAGACTCAAAGACAGCGAGTCGAGCCGATGCGGATGCGGACATCCCCGGACCATCTTTCAGTCATGCTCAACTCCTAAGAAACTTCGAAAACCATGGCCTAAATGAAAAAGACCTTGTTGCTCTTTCTGGAGCACACACTATTGGATTTTCGCGTTGTCTTTTATTTAGGGATCGAATCTACAACGACAACAACATCGATTCTAACTTTGCGAAAGAGCTTCAAAATATATGCCCGAGAAACGGAGGAGACTCTAACCTCGCGCCTTTGGACAGTGTTACACGGGCGAAATTTGATGTGCTTTATTTTGCGGATTTGATTGAAAGGAAAGGTGTTCTTCATTCTGATCAGGTATTGTTGAATGGTGGTTTCTCTGGTGCCTTGGTGAGAAAGTATAGTTATGATACTAGGGCTTTCTATAAGGATTTTGCGAAATCTATGATTAAGATGGGAGATATTAAGCCACTTGTTGGTAATGAAGGTGAAGTTCGTTACAACTGCAGGAAAGCAAATTAA 960 0.4062 MSSKIYFSMFIHTLVFATLATATFSLTPNYYDYTCPNALSTIKSVVKGAVQKEYRMGASLLRLHFHDCFVNGCDGSILLDSTPSMDSEKNANPNINSARGFEVIDEIKQAVDEACGKPVVSCADILTIAARDSVVALGGPSWKVKLGRRDSKTASRADADADIPGPSFSHAQLLRNFENHGLNEKDLVALSGAHTIGFSRCLLFRDRIYNDNNIDSNFAKELQNICPRNGGDSNLAPLDSVTRAKFDVLYFADLIERKGVLHSDQVLLNGGFSGALVRKYSYDTRAFYKDFAKSMIKMGDIKPLVGNEGEVRYNCRKAN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05018 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Vifa2g05018 319 SUPERFAMILY Heme-dependent peroxidases 26 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 FunFam Peroxidase 29 172 - -
Vifa2g05018 319 FunFam Peroxidase 164 298 - -
Vifa2g05018 319 CDD secretory_peroxidase 26 317 IPR033905 GO:0004601|GO:0042744
Vifa2g05018 319 PANTHER PEROXIDASE 72-RELATED 24 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 Gene3D - 29 316 - -
Vifa2g05018 319 Pfam Peroxidase 43 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vifa2g05018 319 Gene3D Peroxidase, domain 2 164 298 - -
Vifa2g05018 319 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa2g05018 319 ProSiteProfiles Plant heme peroxidase family profile. 25 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05018 Vifa-Chr2 1489305320 1489306661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05018 26 319 Peroxidase AT5G05340 60.473 1.78e-128 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05018 K00430 - gmx:100814067 459.914