Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05010 ATGGAACGAAACGGAAGTGTGCTTATGCAACGATATGAACTCGGGAAGTTGTTAGGCCAGGGAACTTTCGCAAAGGTTTATCATGCAAGGAACCTCAAAAACGGCATGAATGTTGCGATCAAAATTATTGATAAAGAAAGGGTTTTGAGAGTTGGGATGATTGATCAAATTAAGCGCGAAATTTCGGTGATGAGACTTGTCAGGCATCCACATGTTGTTGAGCTTTACGAGGTAATGGCGAGCAAAACCAAGATTTACTTTGTCATGGAGTATGTCAAAGGTGGTGAACTCTTTGATAAGATATCCAAAGGAAAGCTCAATCATGATGATGCTAGGAGATATTTTCAGCAACTGATCAGTGCCGTTGATTACTGTCATAGTCGAGGTGTGTGCCATCGCGATTTAAAACCAGAAAATCTTCTGTTGGATGAAAACGGAAATTTGAAGGTCTCAGATTTTGGGTTAAGTGCGCTTGCCGACACTAAGCGCCAAGATGGATTACTCCATACTACATGTGGCACACCTGCGTATGTCGCCCCGGAAGTGATAAACCGAAAGGGATACGACGGGACTAAAGCTGATATATGGTCTTCTGGTGTGATCTTGTTTGTTATGTTGGCTGGTTTTCTTCCGTTTAGAGATCCAAATTTGATAGAGATGTATAAGAAAATCGGTAAGGCGGATTTCAAATATCCTAACTGGTTTTCATCGGATGTACGAAGATTGTTGTCGAAAATATTGAATCCAAATCCAAAGTCGAGGATATCATTGGCCAAAATTATGGAAAGTTCTTGGTTCAAAAAGGGGTTAAAGAAGCCTATTATTACCGACACAGACAACAAAGAACTAGCTCCTCTCGACATAGATGAAGTATTTAAAGCTTCTGAGAATGGCGATAATGTTGATCTTCCGAAACCTTGTAGTAACCTAAACGCTTTCGATATCATCTCCTTTTCGTCAGGTTTTGACTTGTCGAGTTTGTTTGCGGAGAAAGAACAGAAGACAGAAATGCGATTTACGTCCTACAAGCCTGCTTCGGTTATCATCTCCAAATTTGAAGAAATTTGCAAGAGTCTCGGGCTAAAACTGAAGAAAAAAGACGGAGGTTTGCTCAAGTTAGAAAGTTCGAAAGAAGGAAGGAAAGGACGTTTAGGTATCAATGCAGAGATTTTCGAGATCACACCGGCCTTCCATTTAGTCGAGCTGAAAAAGTCGAACGGAGACACGTTGGAGTACCAAAAGCTTTTGAAAGAGAGTGTTAGGCCTTCACTTAAAGACATTGTTTGGACATGGCAAGGAGAACAACCTGAAGGACATTGTTTGGACATGGCAAGGAGAACAACCTCGCCAGTTGCAGAAAGATGA 1365 0.4125 MERNGSVLMQRYELGKLLGQGTFAKVYHARNLKNGMNVAIKIIDKERVLRVGMIDQIKREISVMRLVRHPHVVELYEVMASKTKIYFVMEYVKGGELFDKISKGKLNHDDARRYFQQLISAVDYCHSRGVCHRDLKPENLLLDENGNLKVSDFGLSALADTKRQDGLLHTTCGTPAYVAPEVINRKGYDGTKADIWSSGVILFVMLAGFLPFRDPNLIEMYKKIGKADFKYPNWFSSDVRRLLSKILNPNPKSRISLAKIMESSWFKKGLKKPIITDTDNKELAPLDIDEVFKASENGDNVDLPKPCSNLNAFDIISFSSGFDLSSLFAEKEQKTEMRFTSYKPASVIISKFEEICKSLGLKLKKKDGGLLKLESSKEGRKGRLGINAEIFEITPAFHLVELKKSNGDTLEYQKLLKESVRPSLKDIVWTWQGEQPEGHCLDMARRTTSPVAER 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05010 454 Pfam NAF domain 308 365 IPR004041 GO:0007165
Vifa2g05010 454 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Vifa2g05010 454 CDD STKc_SnRK3 11 265 - -
Vifa2g05010 454 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05010 454 FunFam Non-specific serine/threonine protein kinase 305 429 - -
Vifa2g05010 454 CDD CIPK_C 311 425 - -
Vifa2g05010 454 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g05010 454 Gene3D Transferase(Phosphotransferase) domain 1 4 307 - -
Vifa2g05010 454 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vifa2g05010 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vifa2g05010 454 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vifa2g05010 454 Gene3D Kinase associated domain 1, KA1 308 430 - -
Vifa2g05010 454 FunFam Non-specific serine/threonine protein kinase 6 304 - -
Vifa2g05010 454 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Vifa2g05010 454 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 425 - -
Vifa2g05010 454 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05010 Vifa-Chr2 1487830700 1487832064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05010 1 437 CBL-interacting serine-threonine protein kinases AT5G58380 64.114 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa2g05010 Pkinase 6.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05010 K07198 - gmx:100815651 711.835