Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04996 ATGCAACCAAGGGCAAGTACTGGATCTGGTTACCGTTTTAGTGGATCTAGTACGCCTAGCAATTCAAGTGGAGGATCTGATGCAGATGATAATGAGTCACAAGGCGAGGTTTTCATATGGGGAGAGGTTTTTGCAGACGGGGTTCCTTCCAAGACAGATGTGTTGACCCCTAAGCTGTTAGAGTCACATGTTATTCTTGATGTTCGTAACATTGCATCCGGTGCGAGTCACCTTGCTATATTAAACAAGAAAGGAGAGGTTTTTACTTGGGGAGAGGAGTCTGGGGGTAGACTTGGTCATGGAATTGGTAAAGGTTTTGGTAAGCCTCATCTAGTTGAGAATCTTGAAGATGTTACTTTGGATATTGTTGCATGCGGAGAGTTTCATACATGTGCTGTGTCTAAATCTGATGATTTTTTCACATGGGGTGATGGTACACATAATGCTGGACTTCTTGGGCATGGTAATGAGGCTAGCCACTGGATACCAAAGAGTGTCGATGGCTTTTTGGATGGACTTCAAGTTGTATCTGTTGCATGTGGCACATGGCATTCAGCATTGGCAACCTCAAATGGAAAACTATTTACCTTTGGTGATGGAACATTTGGTGTTTTAGGCCATGGTGATCAAGAGAGTGTATCGTATCCAAAGGAAGTACAATTATTAGGTGGACTGAGGACTATTAAGGTTGCTTGTGGTGTATGGCATACTGCAGCTATTGTTGAGGTTGTTTTTCAATCTGGTTCAAATGTTTCATCATGGAAACTCTTCACATGGGGTGATGGCGACAAACATTGTTTAGGCCATGGAAACAAGGAAACCTATCTCCAACCGAAACGTGTTTCACCCCTTATTGAATATAATTTCCAGCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGCCATGTATTTACAATGGGAAGCACTGAAAATGGTCAATTAGGAAATCCAAATTCTGCTGGGAAAGTACCTACGTTAGTCCAAGATAAGTTACTTGGTGAATTTGTTGAGGAAATATCATGTGGAGCGCATCATGTTGCTGTTTTGACATCAAGAAGGGAAGTATATACATGGGGAAAAGGTTCTAATGGAAGACTAGGGCACGGTGACACAGATGAGAGAAAATCTCCTACATTTGTGGTAGCCTTAAAAGACAGGCATTTAAAAAATATCTCATGTGGTTCAAACTTTACATCTTGTATATGTATCCGTAAATCGCTCACTGGAACTGACCAATCTGTTTGCTTTGGATGTAAACTAGCATTTGGTTTAACAAGAAAAAGACACAATTGTTATAATTGTGGATTGGTTTTCTGTCATACTTGTAGTTCTAAAAAGTCATTCAAAGCTGCATTAGCTCCAACGTTCGAAAAACCTCATCGTGTGTGTGATATTTGTTATACTAAGCTTAAAGTTGTTGACACCAATGATCCTTCAAAGTTAAATGGAAAAACTACTCCTTCTCACTGTTCCACAAATGGTATGGAAAGATTAGACCAAGGTATTTTAAGGTCTACAAGAACTCTCTTTTCTTCTTTTACTGAACCAATGAAGTACCTTGAAATAAGGAATAATAAGCCTGGAACTGAATACGGTTCTACTTCTTTCGTAAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTGAAAGATATTGCTTTTCCAAGTACACTGAGTTCTATTCAAAGTGTTTTGAAGCCTTCTACTTCTCCTAGTTCATCACAAAATTCTACATCCCCATACACATGTAGATCAAGTCCTCCTCCACCATATGTCGGTCAAAGATTTTCCGGTGGTCTTATCAATAGTTTGAGCAAGACAAATGATGTTCTTAACCAACGGGTCTCAAATTTGCAGAGCCAAATTCGAGATTTGGAGGAGAGAAGTGACATGAAAGATGTGGAAATTCAGAAGCTTCAGAGAAAGACTACAGAAGTTATTGCCTGGGTTGCAGTGGAGTCTTCTTGTCATAGAGAAGCAAAAGAATTTATTGAATCTACTAAACATCAGTTGAAGGAAATGACTGAGAAGCTACCAGCTGAAATTCCAGAAAGTAATATCTTAAGTACTATGCGAACTCGAGCTGAAGATTTCCTGAAAGAATCTTTTGAATCTGAATCATCAGAGTTGGAGTCCAAGCAACGAAATGCACATGACATATCTGCTGCAGATAATGATGACTCTTCTAAACTAGAAAATATCAGACTAGTAGAAAATGCCGACATTGTAGAAGTTGACTCTTGTCTAGATGAATCAAAGTTAGAGTGTCTGCAACAAAATGCACTTGATATATCTACCACACATAGTGGCAATTTTGAACTACAAGATCATAGACTAGAAGAAAATGCCGACATTGTAGAAGTTGACTCTTGTCTAGATGAATCAAAGTTAGAGTGTTTGCAACCAAATGCACATGGCATATCTGCTGCAGATAACGACTCTTCTAAACTAGAAAATATCAGACTAGTAGAAAATGCCGACATTGTAGAAGTTGATTCTTGTCTAGATGAATCAAAGTTAGAGTGTTTGCAACAAAGTACACTTGATATATCTACCACACATAGTGGTAATTTTGAACTACAAGATGATAGACTAGAAGAAAATGCTGACGTAAAAGTTGACAATTGTCAAGGTGAGGGAAATTTCTATAATGAAATCAATAAACCAACATTGGAGTCAGAGCAACATAATTCACCTGATATAACTACCTCAGATAGTGACACTTCTAAACTGCAAGAACACATTTATGAAAAAATCGACAAGACTGCAAGACGTGATCAATTTGAGACTGGAATAAATGTTCGTCATGAAAGTAATGGATCGTCTATATCTAGTGTTGGAGATGTGATGTCACCCGAAAGTTCAGAAAATGGTTCAATATCAGGGGACAGTTCAAGAGATGGGTGTCTACAAGAAACACAAGTCTTTGAAAAATTTGAGTCTGGTGTTTACGTGTTACTCAAGCTACGGGCTGACGGAATCAAAATTTTTAAAAGAGTTAAATTCAGTAAGCGAAAGTTCACTGAAAGTCAAGCAGAAGAATGGTGGAGCCAAAACAAATGTAGAGTTCTTAGGAAATACTGTCCACGTCATCAAAAGCAAAATGGATCATGTAACATTACACCAAATGTTAAAGAAAATATTGAATCATCGCTTTCTTAA 3174 0.3831 MQPRASTGSGYRFSGSSTPSNSSGGSDADDNESQGEVFIWGEVFADGVPSKTDVLTPKLLESHVILDVRNIASGASHLAILNKKGEVFTWGEESGGRLGHGIGKGFGKPHLVENLEDVTLDIVACGEFHTCAVSKSDDFFTWGDGTHNAGLLGHGNEASHWIPKSVDGFLDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVSYPKEVQLLGGLRTIKVACGVWHTAAIVEVVFQSGSNVSSWKLFTWGDGDKHCLGHGNKETYLQPKRVSPLIEYNFQQIACGHTMTVALTTSGHVFTMGSTENGQLGNPNSAGKVPTLVQDKLLGEFVEEISCGAHHVAVLTSRREVYTWGKGSNGRLGHGDTDERKSPTFVVALKDRHLKNISCGSNFTSCICIRKSLTGTDQSVCFGCKLAFGLTRKRHNCYNCGLVFCHTCSSKKSFKAALAPTFEKPHRVCDICYTKLKVVDTNDPSKLNGKTTPSHCSTNGMERLDQGILRSTRTLFSSFTEPMKYLEIRNNKPGTEYGSTSFVRASLVPSLLQLKDIAFPSTLSSIQSVLKPSTSPSSSQNSTSPYTCRSSPPPPYVGQRFSGGLINSLSKTNDVLNQRVSNLQSQIRDLEERSDMKDVEIQKLQRKTTEVIAWVAVESSCHREAKEFIESTKHQLKEMTEKLPAEIPESNILSTMRTRAEDFLKESFESESSELESKQRNAHDISAADNDDSSKLENIRLVENADIVEVDSCLDESKLECLQQNALDISTTHSGNFELQDHRLEENADIVEVDSCLDESKLECLQPNAHGISAADNDSSKLENIRLVENADIVEVDSCLDESKLECLQQSTLDISTTHSGNFELQDDRLEENADVKVDNCQGEGNFYNEINKPTLESEQHNSPDITTSDSDTSKLQEHIYEKIDKTARRDQFETGINVRHESNGSSISSVGDVMSPESSENGSISGDSSRDGCLQETQVFEKFESGVYVLLKLRADGIKIFKRVKFSKRKFTESQAEEWWSQNKCRVLRKYCPRHQKQNGSCNITPNVKENIESSLS 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04996 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 192 243 IPR000408 -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 892 912 - -
Vifa2g04996 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 305 IPR000408 -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 705 731 - -
Vifa2g04996 1057 SUPERFAMILY RCC1/BLIP-II 34 410 IPR009091 -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 935 970 - -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 568 602 - -
Vifa2g04996 1057 Gene3D - 16 252 IPR009091 -
Vifa2g04996 1057 ProSiteProfiles BRX domain profile. 977 1032 IPR013591 -
Vifa2g04996 1057 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 230 240 IPR000408 -
Vifa2g04996 1057 SMART fyve_4 409 477 IPR000306 GO:0046872
Vifa2g04996 1057 Coils Coil 605 646 - -
Vifa2g04996 1057 PRINTS Chromosome condensation regulator RCC1 signature 178 194 IPR000408 -
Vifa2g04996 1057 PRINTS Chromosome condensation regulator RCC1 signature 194 208 IPR000408 -
Vifa2g04996 1057 PRINTS Chromosome condensation regulator RCC1 signature 353 374 IPR000408 -
Vifa2g04996 1057 PRINTS Chromosome condensation regulator RCC1 signature 137 153 IPR000408 -
Vifa2g04996 1057 PRINTS Chromosome condensation regulator RCC1 signature 295 313 IPR000408 -
Vifa2g04996 1057 PRINTS Chromosome condensation regulator RCC1 signature 68 81 IPR000408 -
Vifa2g04996 1057 PRINTS Chromosome condensation regulator RCC1 signature 87 103 IPR000408 -
Vifa2g04996 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 85 136 IPR000408 -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 937 970 - -
Vifa2g04996 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 137 191 IPR000408 -
Vifa2g04996 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 140 187 IPR000408 -
Vifa2g04996 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 256 302 IPR000408 -
Vifa2g04996 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 191 240 IPR000408 -
Vifa2g04996 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 84 133 IPR000408 -
Vifa2g04996 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 305 354 IPR000408 -
Vifa2g04996 1057 Pfam Regulator of chromosome condensation (RCC1) repeat 359 406 IPR000408 -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 1 32 - -
Vifa2g04996 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 409 IPR000408 -
Vifa2g04996 1057 Coils Coil 661 681 - -
Vifa2g04996 1057 Gene3D - 253 411 IPR009091 -
Vifa2g04996 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 486 IPR013083 -
Vifa2g04996 1057 Pfam Transcription factor regulating root and shoot growth via Pin3 977 1031 IPR013591 -
Vifa2g04996 1057 SUPERFAMILY FYVE/PHD zinc finger 415 477 IPR011011 -
Vifa2g04996 1057 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Vifa2g04996 1057 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 476 IPR017455 -
Vifa2g04996 1057 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 669 - -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 1 30 - -
Vifa2g04996 1057 MobiDBLite consensus disorder prediction 568 586 - -
Vifa2g04996 1057 Pfam FYVE zinc finger 416 475 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04996 Vifa-Chr2 1483007692 1483013311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04996 886 1031 Major Intrinsic Protein MIP AT1G31880 28.387 1.08e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04996 - - mtr:11425711 1440.63