Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04994 ATGGAGCTTGATTTGAATCAGGAGCCTTTGGATCAAACTACTAGCTCAGTAGTTGAATTTGATTCTGTATTGGAAGAACTCGAAGCGGCTGAGGGAAATATTCGGAACCGAATAAGACACCTCGAGGAAATTACTACGAGAGCGAGGCAGAGTCGAGGGTTGCCGCGGCGGATGATGAATTCGCCGATTCGGATAACTAATTTTAGGGGAGATGCGGCGAGTGGTGATGGTGTTCGAGATGAAGAAGAAAGGGAGGAGCAGAATGATGTTGAGAAAGGTGGGAAAAGAAAAAGTGCGCATTTGGTAGCGAAAGCGTTGGGGGTGGAGGAGATTGATGATGGTAAAGTGGAAGAGAGTAGTGGGGGGTTTTATGATTGTAATATATGTTTGGATGTTGCAAGAGATCCTGTTTTGACGTGTTGTGGGCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTGTCGTATGTTTATTCGAGAGCAAAAGAGTGTCCTGTATGTAAAGGGGAGGTTACTGAATCAGGTGTTATTCCGATTTACGGGAATGGTAATGCTGGTGGTGATTGTGAAATGGAAATGAAAGAGGCCGGTTTGAGAGTTCCTCCTCGGCCTAAAGCTCCTAGAATTGAGAGTATTAGACAGAAGTTGATAACGCAGGGTGCATCTTCTTCGTCTATTGTCCAAAGCATTCGGCGGTTTCATAACCGGATTGGTGGCTTTGGAGAACAAGCTCAGTTAGAAAGCCCTAATAGTAATACCAGAGGTGATAGAAATAATGGTACGCTTGTTCGTTCTCGCACGCAGACTGATATTAATCAACACGCTGGCAATCATCAGGTTTCGAGGTTGCTAGAACAAGGAGCTTCTTCATTTTCATCGCTTTCATCAGCGTTAAATTCTGCAATGGATTCTGCAGAAAGATTAGTTCAGGACCTTGAATCTTATATCCACGGTCACAATATAGGAGGAAGCAGAGAGCTAAACACTCGTGCTGATAATAGAAGTTCAACGTTTAGTATTACTGCTACAAACCGCTCAGAGAGTCGTGCTCAAGATGTTGTTGATGTGGCCAATTCTGCTGCTGCAGCAGCTAGAAGTGTTGACAATATTGCTGTTATTGGTTCAGAAATTCAGACAACTGATAGAAACATACAGATTAGTCCGTTAGACCCTTCTTCATCAAACAGTAGAAGAAGAAATGGTGTTTCGAGACAAGTTTCAAATGAACCCAGAAGAAGAAGAAGATTGAGATGA 1251 0.4317 MELDLNQEPLDQTTSSVVEFDSVLEELEAAEGNIRNRIRHLEEITTRARQSRGLPRRMMNSPIRITNFRGDAASGDGVRDEEEREEQNDVEKGGKRKSAHLVAKALGVEEIDDGKVEESSGGFYDCNICLDVARDPVLTCCGHLFCWPCFYQLSYVYSRAKECPVCKGEVTESGVIPIYGNGNAGGDCEMEMKEAGLRVPPRPKAPRIESIRQKLITQGASSSSIVQSIRRFHNRIGGFGEQAQLESPNSNTRGDRNNGTLVRSRTQTDINQHAGNHQVSRLLEQGASSFSSLSSALNSAMDSAERLVQDLESYIHGHNIGGSRELNTRADNRSSTFSITATNRSESRAQDVVDVANSAAAAARSVDNIAVIGSEIQTTDRNIQISPLDPSSSNSRRRNGVSRQVSNEPRRRRRLR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04994 416 Pfam Zinc finger, C3HC4 type (RING finger) 125 172 - -
Vifa2g04994 416 MobiDBLite consensus disorder prediction 68 96 - -
Vifa2g04994 416 MobiDBLite consensus disorder prediction 240 260 - -
Vifa2g04994 416 MobiDBLite consensus disorder prediction 243 260 - -
Vifa2g04994 416 MobiDBLite consensus disorder prediction 74 96 - -
Vifa2g04994 416 SUPERFAMILY RING/U-box 123 179 - -
Vifa2g04994 416 Coils Coil 24 44 - -
Vifa2g04994 416 ProSiteProfiles Zinc finger RING-type profile. 126 167 IPR001841 -
Vifa2g04994 416 MobiDBLite consensus disorder prediction 384 402 - -
Vifa2g04994 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 200 IPR013083 -
Vifa2g04994 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 96 298 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa2g04994 416 MobiDBLite consensus disorder prediction 384 416 - -
Vifa2g04994 416 SMART ring_2 126 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04994 Vifa-Chr2 1482045579 1482046829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04994 70 365 C3H Transcription Factor Family AT3G58030 34.218 3.65e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04994 - - cam:101488454 517.694